Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1150 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATCGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGAATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTTAGAGATCAGTTGGAACAAGTTTGCTCCTTGACCACAAGATACACTGGGCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCCGAAATGATGCCATTGCCCTCGATGCTCCCACCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCGTCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATTCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGCGATACCGCCGTTGTTATAATGAATAGCATCACTCTCGTGGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCGATCGACAGCTTCCATGACAGTCTTCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAGTGTGAGAGAATTGCAAGTCTTATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAGAACCTAATGAAACTCGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCGTGGACGGCGTTATCCGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCACTATCGAGTCTTCGATCTTCTACGAGATGAACGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCGTCTACGCGACGATTGACGTCGATTCGATTCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCCAGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGTGTAACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCACCAACGCCGCCGCCACCGCCGCCCAAGCAATAA 2421 46.88 MYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMPLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTTNANSSCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENGNNVAEPNNAPTPPPPPPKQ 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12205998 12213954 - CaPI482276_09g011500.1 Cam09g1150 135479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1150 806 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Cam09g1150 806 Pfam Homeodomain 93 148 IPR001356 GO:0003677(InterPro)
Cam09g1150 806 CDD START_ArGLABRA2_like 287 518 - -
Cam09g1150 806 Pfam START domain 293 519 IPR002913 GO:0008289(InterPro)
Cam09g1150 806 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Cam09g1150 806 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Cam09g1150 806 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 778 IPR042160 -
Cam09g1150 806 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Cam09g1150 806 Gene3D - 329 517 IPR023393 -
Cam09g1150 806 MobiDBLite consensus disorder prediction 785 806 - -
Cam09g1150 806 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Cam09g1150 806 SUPERFAMILY Bet v1-like 285 521 - -
Cam09g1150 806 Coils Coil 149 169 - -
Cam09g1150 806 FunFam Homeobox-leucine zipper protein HDG1 79 166 - -
Cam09g1150 806 Gene3D - 78 161 - -
Cam09g1150 806 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam09g1150 806 SUPERFAMILY Bet v1-like 556 774 - -
Cam09g1150 806 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0210 Cam-Chr5:2121602 Cam09g1150 Cam-Chr9:12205998 3.60E-142 dispersed
Cam05g0949 Cam-Chr5:8569244 Cam09g1150 Cam-Chr9:12205998 2.10E-150 dispersed
Cam05g1236 Cam-Chr5:11944761 Cam09g1150 Cam-Chr9:12205998 6.40E-143 dispersed
Cam07g1252 Cam-Chr7:26905000 Cam09g1150 Cam-Chr9:12205998 3.40E-121 dispersed
Cam09g0191 Cam-Chr9:2666975 Cam09g1150 Cam-Chr9:12205998 4.00E-111 dispersed
Cam09g1150 Cam-Chr9:12205998 Cam10g0242 Cam-Chr10:4195991 5.30E-08 dispersed
Cam09g1150 Cam-Chr9:12205998 Cam06g0223 Cam-Chr6:4022139 9.90E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52599 PF01852 START 6.40E-43 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1150 - - - 0.0