Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1183 ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTACGCCGCCACAGCCACAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGGCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCGTCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTTTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCTAAATCTAGTGTTGTAATTGAAACTCCAAGCCCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGTCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGTTTGAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCGGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCGGGTGTTTGTGCTGGCGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACATAAACCACAGTGATATCGAAACCGATATCGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCCGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG 2043 47.04 MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVTPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSGRTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAVDEVVTDTEWFYLVSMTQSFASGVGLPGQAFFDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNNLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPAPTPSTTNSQPISKITTETIENPKSSVVIETPSPVVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGVCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSSNKDSCISSSNQPPPDQSSNINHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12860593 12862635 + CaPI482276_09g011830.1 Cam09g1183 135512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1183 680 FunFam Transcription factor bHLH13 489 563 - -
Cam09g1183 680 MobiDBLite consensus disorder prediction 473 506 - -
Cam09g1183 680 Gene3D - 495 573 IPR036638 GO:0046983(InterPro)
Cam09g1183 680 SMART finulus 502 551 IPR011598 GO:0046983(InterPro)
Cam09g1183 680 MobiDBLite consensus disorder prediction 341 357 - -
Cam09g1183 680 Pfam Plant bHLH transcription factor, ACT-like domain 602 658 IPR054502 -
Cam09g1183 680 Coils Coil 542 576 - -
Cam09g1183 680 MobiDBLite consensus disorder prediction 392 413 - -
Cam09g1183 680 MobiDBLite consensus disorder prediction 572 596 - -
Cam09g1183 680 PANTHER MYC 66 675 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cam09g1183 680 MobiDBLite consensus disorder prediction 118 137 - -
Cam09g1183 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 499 569 IPR036638 GO:0046983(InterPro)
Cam09g1183 680 MobiDBLite consensus disorder prediction 296 330 - -
Cam09g1183 680 MobiDBLite consensus disorder prediction 296 357 - -
Cam09g1183 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 496 545 IPR011598 GO:0046983(InterPro)
Cam09g1183 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 74 254 IPR025610 -
Cam09g1183 680 MobiDBLite consensus disorder prediction 392 434 - -
Cam09g1183 680 CDD bHLH_AtAIB_like 493 568 - -
Cam09g1183 680 Pfam Helix-loop-helix DNA-binding domain 500 546 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0077 Cam-Chr7:1947236 Cam09g1183 Cam-Chr9:12860593 3.40E-37 dispersed
Cam09g1183 Cam-Chr9:12860593 Cam10g0080 Cam-Chr10:2356530 6.40E-31 dispersed
Cam10g1322 Cam-Chr10:26746137 Cam09g1183 Cam-Chr9:12860593 2.20E-07 dispersed
Cam05g0383 Cam-Chr5:3518326 Cam09g1183 Cam-Chr9:12860593 3.00E-14 transposed
Cam06g0377 Cam-Chr6:5878062 Cam09g1183 Cam-Chr9:12860593 1.30E-20 transposed
Cam06g0957 Cam-Chr6:14532730 Cam09g1183 Cam-Chr9:12860593 3.40E-08 transposed
Cam10g0160 Cam-Chr10:3229778 Cam09g1183 Cam-Chr9:12860593 7.90E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52605 PF14215 bHLH-MYC_N 7.20E-55 CL0161 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1183 K13422 - csv:101218165 1156.35