Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1197 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCATCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGACGATGAATCCCATCCTCCGTCAGAATTTGTCACCGCCGCAGACTCTACCGCCCCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCATATGAGAGATTGCCACTAGAAGAACAAGAACAAGAACAAGAACAAGAACAAGAGCAAGATCAACTTCAGATGCAGCCACCGACGTCGCAGGGCGGCAGTAGCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 822 50.49 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVTAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQEQDQLQMQPPTSQGGSSGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13079260 13080081 - CaPI482276_09g011970.1 Cam09g1197 135526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1197 273 CDD DUF296 92 175 IPR005175 -
Cam09g1197 273 MobiDBLite consensus disorder prediction 215 260 - -
Cam09g1197 273 Gene3D - 91 226 - -
Cam09g1197 273 MobiDBLite consensus disorder prediction 22 81 - -
Cam09g1197 273 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Cam09g1197 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 265 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam09g1197 273 MobiDBLite consensus disorder prediction 31 45 - -
Cam09g1197 273 FunFam AT-hook motif nuclear-localized protein 91 219 - -
Cam09g1197 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Cam09g1197 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Cam09g1197 273 MobiDBLite consensus disorder prediction 225 260 - -
Cam09g1197 273 PIRSF ESCAROLA 7 271 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0196 Cam-Chr6:3789490 Cam09g1197 Cam-Chr9:13079260 4.60E-60 dispersed
Cam07g0345 Cam-Chr7:4631431 Cam09g1197 Cam-Chr9:13079260 7.30E-58 dispersed
Cam08g1631 Cam-Chr8:22524887 Cam09g1197 Cam-Chr9:13079260 1.70E-44 dispersed
Cam09g1197 Cam-Chr9:13079260 Cam11g0699 Cam-Chr11:8606729 1.50E-50 dispersed
Cam10g0169 Cam-Chr10:3301644 Cam09g1197 Cam-Chr9:13079260 2.10E-80 wgd
Cam05g0298 Cam-Chr5:2841698 Cam09g1197 Cam-Chr9:13079260 7.40E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1197 - - - 0.0