Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cam09g1204	ATGCCGGTGGCTGCATCGGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCCTTCCGAACACATATAATGCAGACAAAAGAACTTGGCACCTGTCCTGTTCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTATGAGCTCTTGGATGAAATAATGGATTTTGGTTACCCACAAAACCTCTCTCCTGAAATTCTAAAACTATATATCACTCAGGAAGGAGTTCGCTCGCCATTCTCATCCAAGCCTTCAGATAAACCTGTCCCAAATGCAACTTTACAAGTTACGGGTGCTGTTGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAGAATGAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTCTGCGTTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGCATGCCTGATTTAAAGTTGGGTTTAAACGATAAGATTGGCCTTGAGAAAGAGTCACAGTTGAAGTCCCGTCCAGCTAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTGCCGCCGGATGGGGAATTTGAATTGATGAAATACCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTTCTCCCAACAATTAAGGAACTTGGTAGGACACATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCTGTTCCAAAACAGACAGCTAAAACTAGTTTTCAAGTGACATCAGGTCGAGCCAAGTACAACGCCTCAATCGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAGTCGAGCTGATTTCTACAATGACCGAAAGGAAGCCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGAGTCCGTTTCCTTAAGGTGTGGGAGAAAAGTGGTTACAACACCGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCATATGAGATCCGGTGTTAG	1317	41.99	MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTMTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC	438

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
9	13312576	13320217	+	CaPI482276_09g012040.1	Cam09g1204	135533

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cam09g1204	438	FunFam	AP-2 complex subunit mu	290	400	-	-
Cam09g1204	438	ProSitePatterns	Clathrin adaptor complexes medium chain signature 1.	166	186	IPR018240	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	Gene3D	-	5	145	-	-
Cam09g1204	438	Gene3D	Mu homology domain, subdomain B	174	433	-	-
Cam09g1204	438	SUPERFAMILY	SNARE-like	6	142	IPR011012	-
Cam09g1204	438	Gene3D	Mu homology domain, subdomain B	290	437	-	-
Cam09g1204	438	FunFam	AP-2 complex subunit mu, putative	4	144	-	-
Cam09g1204	438	Pfam	Adaptor complexes medium subunit family	167	438	IPR028565	-
Cam09g1204	438	PANTHER	AP COMPLEX SUBUNIT MU	5	437	IPR050431	GO:0006897(PANTHER)\|GO:0016192(PANTHER)\|GO:0031410(PANTHER)
Cam09g1204	438	CDD	AP2_Mu_N	6	144	IPR043532	-
Cam09g1204	438	PIRSF	AP_complex_mu	4	438	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	357	368	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	317	332	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	248	275	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	168	196	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	102	129	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	PRINTS	Clathrin coat assembly protein signature	15	35	IPR001392	GO:0006886(InterPro)\|GO:0016192(InterPro)\|GO:0030131(InterPro)
Cam09g1204	438	CDD	AP-2_Mu2_Cterm	175	437	IPR043512	-
Cam09g1204	438	SUPERFAMILY	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	166	437	IPR036168	-
Cam09g1204	438	ProSiteProfiles	Mu homology domain (MHD) profile.	177	437	IPR028565	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cam09g1204	K11826	-	-	csv:101220779	858.211

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cam01g1118	Cam-Chr1:16979071	Cam09g1204	Cam-Chr9:13312576	1.30E-37	dispersed
	Cam05g2758	Cam-Chr5:34813504	Cam09g1204	Cam-Chr9:13312576	1.80E-92	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi2g662	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cone12ag0458	.	.	.	.	.	.	.	.	.	.	.	.	.	Bma12g00203	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cla09g01145	Cam09g1204	Cec09g1218	Cco09g1245	.	.	Cre09g1165	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0004704	2	1	2	2	2	1	2	1	1	1	1	1	2	1	1	2	1	2	3	1	1	1	1	1	1	1	1	3	1	1	42