Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1214 ATGGCTCTTAGAATGTGGGCTTCTTCTACTGCCAATGCACTCAGACTCTCTTCTTCATCTAAAACCTATCTCTCTCCTTCATTCTCTCTCTCCAGATGCTTCTCCACTGTTTTGGATGGGCTGAAGTATGCTTCTTCACATGAGTGGGTGAAGCATGAGGGCTCTGTTGCTACCGTTGGCATCACTGACCATGCTCAGGATCATCTGGGAGAAGTGGTGTTTGTGGATCTGCCAGAATCAGGTGGTTCAGTTTCTCAAGGTAAGAGCTTTGGAGCAGTGGAGAGTGTGAAAGCAACCAGTGATATCAACTCCCCAATCTCTGGTGAGATTGTTGAAGTTAACCCACAGCTTAAGGAATCTCCTGGTTTGATCAATTCAAGTCCATATGAAGGGGGATGGATGATAAAAGTGAAGCCAAGCAACCCAGCTGAATTAGATTCCTTGTTGGGACCAAAGGAATATACAAAGTTTTGTGAGGAAGAAGATGCAGCCCACTAA 498 45.38 MALRMWASSTANALRLSSSSKTYLSPSFSLSRCFSTVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPESGGSVSQGKSFGAVESVKATSDINSPISGEIVEVNPQLKESPGLINSSPYEGGWMIKVKPSNPAELDSLLGPKEYTKFCEEEDAAH 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13521134 13523032 - CaPI482276_09g012140.1 Cam09g1214 135543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1214 165 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 30 162 IPR002930 GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0005960(InterPro)|GO:0009249(PANTHER)|GO:0019464(InterPro)|GO:0019464(PANTHER)
Cam09g1214 165 Pfam Glycine cleavage H-protein 41 160 IPR033753 -
Cam09g1214 165 NCBIfam glycine cleavage system protein GcvH 39 162 IPR017453 GO:0005960(InterPro)|GO:0019464(InterPro)
Cam09g1214 165 Gene3D - 35 165 - -
Cam09g1214 165 ProSiteProfiles Biotinyl/lipoyl domain profile. 56 138 IPR000089 -
Cam09g1214 165 CDD GCS_H 43 137 IPR033753 -
Cam09g1214 165 Hamap Glycine cleavage system H protein [gcvH]. 38 159 IPR002930 GO:0005960(InterPro)|GO:0019464(InterPro)
Cam09g1214 165 FunFam Glycine cleavage system H protein 35 161 - -
Cam09g1214 165 SUPERFAMILY Single hybrid motif 37 160 IPR011053 -
Cam09g1214 165 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 81 110 IPR003016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1214 K02437 - - csv:101222346 318.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1003 Cam-Chr1:13910673 Cam09g1214 Cam-Chr9:13521134 7.00E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g655 . . . . . . . . . . Cma02g01600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00470 . . . . . Cpe15g00350 . . . . . . . Cla09g01154 Cam09g1214 Cec09g1236 Cco09g1257 . . Cre09g1175 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001731 4 1 2 1 2 2 2 2 2 2 2 2 3 2 2 3 2 6 2 2 2 2 2 2 2 2 2 4 2 3 69