Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1259 ATGTCTTCACTACTAGCACTTACTGTTGCATCAATATCTGACTCTTGCTTTCTTGATCGGGAAGAGCTTGTAGAAGAGCAAGGGATGCCTCTCATAAAAGTGGAATCAATGATTTTAACAACAGGCTGCAAAAACTTTGGAGAAGGGGGTGAAATAGCAGCTCTTTTAACTGTCACACCTAGGGCTCAAGCCCTTAAACAACTTTCTTCTAGAAGATCTGTATTAGCAGTGGCTAAGAGTGATCTGGGGAAGGGAGTCTTTTGTACTACCTTCAGGGGAATATCAAGTGACAACCATTCCCAGTTGAGATATCCGGGTACTTTTCATGATCCAAAAGATCTTTTGTTCTATTTACATTCTTTGCCTTGGTGCAGTGGAAAAATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGATGCTCGCTCACAAGTTTGTTCAAAAGTCGGTGGAATCTGATCAGTACTTGAAGAAAGCAAAAGCAAAAAAATCTTGGTGGCCATTTGGATGGAACAATCAATCATTCAAAGATGAAGAAGAACAATTTTTTAGCCAAGAAGACTGGGAACAACTGAACAAATTTATAGGGTACAAGGAAGATGAAAATTCACTGTCCATCATAAACGTTGGCAAAGTGGACACTCTTCTTACTTCTTTGGAGGTTCACATGAACCGTAATGCTTCAAAGCTTACGGATGAGGCTCAACATTGTCTTGCTGAACTGTCATGTGAAGACCTTAATTGTTCCATGAAATTTTTTCCAGAAACGAAAGTTTTTGATATCAATTTGGGGTCATATCAACTATCTTCTCCCAGTGGTCTCCTTGCTGTGAGTGCTGCTGTTCATGATTCATTGGTTGGTATCTTCTGTTACAAGCCATTTGATGCTAAAGTGGACTGGAGCTTGGTTGTGAAGGCTTCTCCTTGTTACATGACTTATCTCAAAGATGCCATCGAACAAATTGTGAGCTTCTTTGAGAGCAGCACTGCTGTTGGTCAGACCGTGGTGTTGGAAACAGCAGCTGCCTTACAGAAACAAGTCAGAGGAAATCGACAAGAATCAGAATTATCTTCTTTAGACGAGGTGCCGGTGTCCCTTGATCTCCCCTTAGAAAATCTTGGCGGCCAAATTTGCATTCTCCAAAACAGCCAACGCAAAATCAATCCAAATTCCCCCTCAATTAATGATTCCAGGGTGCCGGTGTCCCTTGATCTCCCCTTAGAAGCAGGCGCTCCCTCCAACAAACAATTAATGTCGAAGGCATTGAACTCTTCAGCTCTTCTCCCTCAAGATTCTCAAGCGTCGGGTTCCTTCGCACCTCTTGGCTTCTGGTCGGTGGATCCTCATCTTTCTTCTCAAATTTTCAGTCAATCCTTAATCAATATCAATGGCTCAAATGTAACCTTTTTGCGAGGCACTTCAAATCCCGCTGATCCTCAACCATGTTCAGAGCACTCGGATGTGGAAGTCGAGTCAATAGTTAGTGCAACCAGTGACGACATTGAGCAGTGTGACCCTGTGGAACATCAAGAAAAGGGGGCAACTTTTGATTCATTTGGAAAGACATTATGA 1701 42.03 MSSLLALTVASISDSCFLDREELVEEQGMPLIKVESMILTTGCKNFGEGGEIAALLTVTPRAQALKQLSSRRSVLAVAKSDLGKGVFCTTFRGISSDNHSQLRYPGTFHDPKDLLFYLHSLPWCSGKMTWEQVLKFANLRKRYISLYASLLKSDPTRAIVNDDKHIEELDRELDIELILQWRMLAHKFVQKSVESDQYLKKAKAKKSWWPFGWNNQSFKDEEEQFFSQEDWEQLNKFIGYKEDENSLSIINVGKVDTLLTSLEVHMNRNASKLTDEAQHCLAELSCEDLNCSMKFFPETKVFDINLGSYQLSSPSGLLAVSAAVHDSLVGIFCYKPFDAKVDWSLVVKASPCYMTYLKDAIEQIVSFFESSTAVGQTVVLETAAALQKQVRGNRQESELSSLDEVPVSLDLPLENLGGQICILQNSQRKINPNSPSINDSRVPVSLDLPLEAGAPSNKQLMSKALNSSALLPQDSQASGSFAPLGFWSVDPHLSSQIFSQSLININGSNVTFLRGTSNPADPQPCSEHSDVEVESIVSATSDDIEQCDPVEHQEKGATFDSFGKTL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14709197 14715882 + CaPI482276_09g012590.1 Cam09g1259 135588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1259 566 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 125 404 IPR026847 GO:0006623(PANTHER)|GO:0019898(PANTHER)|GO:0045053(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1259 K19525 - - csv:101212417 505.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1259 Cam-Chr9:14709197 Cam09g1364 Cam-Chr9:19061858 2.60E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00040 . Blo03g00821 . Bda07g00127 . . Bpe11g00358 . . . . Cmo19g00390 . . . . . . . . . . . . . Cla09g01192 Cam09g1259 Cec09g1274 Cco09g1310 . . Cre09g1223 . Csa03g04662 . Cme04g00049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015104 0 0 0 0 0 3 1 1 2 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 3 0 0 0 0 0 15