Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1283 ATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAACAAAGAAGTTAAAATGCTTAAAAGAAAGCTGCAACAAGCAGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCGTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCCATATGGATCAGGAGTACAGCAAGAACAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGACATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTAACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTTGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAAAAGTGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAACTGCGTGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCGTCCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.93 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKNISINKNKEVKMLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQCLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNPYGSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDKSGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPSSHSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15448249 15454052 - CaPI482276_09g012830.1 Cam09g1283 135612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1283 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1283 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Cam09g1283 541 MobiDBLite consensus disorder prediction 513 541 - -
Cam09g1283 541 Gene3D - 4 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam09g1283 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cam09g1283 541 FunFam GATA transcription factor 27 3 85 - -
Cam09g1283 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1283 541 MobiDBLite consensus disorder prediction 513 535 - -
Cam09g1283 541 Pfam Asx homology domain 286 370 IPR028020 -
Cam09g1283 541 Gene3D - 294 385 IPR038108 -
Cam09g1283 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1283 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 410 IPR044867 -
Cam09g1283 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam10g0224 Cam-Chr10:3963797 Cam09g1283 Cam-Chr9:15448249 7.20E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52612 PF13919 ASXH 3.70E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1283 - - - 0.0