Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1383 TTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCAGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.44 FPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19687093 19690298 - CaPI482276_09g013830.1 Cam09g1383 135712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1383 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cam09g1383 388 Gene3D - 21 382 - -
Cam09g1383 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cam09g1383 388 PANTHER ACTIN 19 380 IPR004000 -
Cam09g1383 388 SMART actin_3 18 388 IPR004000 -
Cam09g1383 388 FunFam Major actin 272 351 - -
Cam09g1383 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cam09g1383 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cam09g1383 388 PRINTS Actin signature 153 172 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 74 96 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 39 48 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 128 141 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 62 73 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 249 265 IPR004000 -
Cam09g1383 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cam09g1383 388 FunFam Actin, alpha skeletal muscle 14 182 - -
Cam09g1383 388 Gene3D - 151 351 - -
Cam09g1383 388 Gene3D Actin; Chain A, domain 4 193 284 - -
Cam09g1383 388 FunFam Actin, muscle 193 284 - -
Cam09g1383 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cam09g1383 388 FunFam Putative actin-related protein 5 352 380 - -
Cam09g1383 388 Pfam Actin 16 388 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1633 Cam-Chr6:27771807 Cam09g1383 Cam-Chr9:19687093 3.60E-75 dispersed
Cam09g0403 Cam-Chr9:4380109 Cam09g1383 Cam-Chr9:19687093 3.40E-55 dispersed
Cam09g1383 Cam-Chr9:19687093 Cam10g1718 Cam-Chr10:31211794 1.00E-211 dispersed
Cam09g1383 Cam-Chr9:19687093 Cam04g0905 Cam-Chr4:23173196 3.00E-211 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1383 K10355 - csv:101214459 755.362