Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1383 TTTCCAATCAAGTTTTTGGGTGAAGTTTGGAAGATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCAGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCTGAATATGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA 1167 46.44 FPIKFLGEVWKMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19687093 19690298 - CaPI482276_09g013830.1 Cam09g1383 135712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1383 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Cam09g1383 388 Gene3D - 21 382 - -
Cam09g1383 388 ProSitePatterns Actins and actin-related proteins signature. 117 129 IPR020902 -
Cam09g1383 388 PANTHER ACTIN 19 380 IPR004000 -
Cam09g1383 388 SMART actin_3 18 388 IPR004000 -
Cam09g1383 388 FunFam Major actin 272 351 - -
Cam09g1383 388 ProSitePatterns Actins signature 1. 66 76 IPR004001 -
Cam09g1383 388 SUPERFAMILY Actin-like ATPase domain 17 166 IPR043129 -
Cam09g1383 388 PRINTS Actin signature 153 172 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 74 96 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 39 48 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 128 141 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 62 73 IPR004000 -
Cam09g1383 388 PRINTS Actin signature 249 265 IPR004000 -
Cam09g1383 388 CDD NBD_sugar-kinase_HSP70_actin 21 194 - -
Cam09g1383 388 FunFam Actin, alpha skeletal muscle 14 182 - -
Cam09g1383 388 Gene3D - 151 351 - -
Cam09g1383 388 Gene3D Actin; Chain A, domain 4 193 284 - -
Cam09g1383 388 FunFam Actin, muscle 193 284 - -
Cam09g1383 388 SUPERFAMILY Actin-like ATPase domain 160 388 IPR043129 -
Cam09g1383 388 FunFam Putative actin-related protein 5 352 380 - -
Cam09g1383 388 Pfam Actin 16 388 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1383 K10355 - - csv:101214459 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1633 Cam-Chr6:27771807 Cam09g1383 Cam-Chr9:19687093 3.60E-75 dispersed
Cam09g0403 Cam-Chr9:4380109 Cam09g1383 Cam-Chr9:19687093 3.40E-55 dispersed
Cam09g1383 Cam-Chr9:19687093 Cam10g1718 Cam-Chr10:31211794 1.00E-211 dispersed
Cam09g1383 Cam-Chr9:19687093 Cam04g0905 Cam-Chr4:23173196 3.00E-211 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.8e-215 742.7
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.7e-214 740.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.5e-210 726.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT2G19760 72.1 8.6e-49 189.9
Cam11g1523 . 1 98 Cytoskeleton Gene Families AT2G19760 73.5 8.1e-39 156.8
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT4G29350 72.1 9.5e-48 186.4
Cam11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cam11g0213 . 1 130 Cytoskeleton Gene Families AT4G29340 61.2 4.2e-43 171.0
Cam11g1523 . 1 97 Cytoskeleton Gene Families AT4G29340 72.0 7.0e-38 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276