Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1394 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCGGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAGATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.94 MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20215650 20216450 - CaPI482276_09g013940.1 Cam09g1394 135723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1394 266 MobiDBLite consensus disorder prediction 250 266 - -
Cam09g1394 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Cam09g1394 266 MobiDBLite consensus disorder prediction 55 76 - -
Cam09g1394 266 MobiDBLite consensus disorder prediction 236 266 - -
Cam09g1394 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677(InterPro)
Cam09g1394 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 251 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam09g1394 266 MobiDBLite consensus disorder prediction 1 76 - -
Cam09g1394 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Cam09g1394 266 MobiDBLite consensus disorder prediction 1 19 - -
Cam09g1394 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1394 K08066 - - csv:101213813 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1702 Cam-Chr3:32181447 Cam09g1394 Cam-Chr9:20215650 9.90E-65 dispersed
Cam06g1935 Cam-Chr6:30308792 Cam09g1394 Cam-Chr9:20215650 9.60E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1935 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.9e-89 323.6
Cam09g1394 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cam03g1702 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.3e-52 203.4
Cam03g1702 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 2.2e-55 212.6
Cam09g1394 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cam06g1935 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cam03g1702 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.0 2.3e-62 235.7
Cam09g1394 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cam06g1935 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cam06g1935 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cam06g1935 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.3e-81 297.4
Cam09g1394 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cam03g1702 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 5.6e-49 191.4
Cam09g1394 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cam03g1702 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.1e-50 195.3
Cam06g1935 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cam11g1343 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 4.9e-60 228.4
Cam08g1459 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.8e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52618 PF00125 Histone 6.00E-18 CL0012 Cam TF