Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1542 ATGGGTGCTGATGATCATAAGGGTGGAGTTGGCCTGAAGGCCTGTCACCCAAGCTGGTCGAGGGATTCTTCCATGGTAAGAGGGCTTACTTTTCCTGCCCTCAAAGGACTGAACTTTCCTTCCCACCATATGGCTGCCGCCATTGGACCTCTAACCTCTACCAAAACATCAGGAGCTGCATTTTTGGTTTTCTTGTTTCTGTCAATGGCGGCGGCTGTGGGGGGTTTGATGACCGGCTCTACCCGTCCGAGTGTTGAATTTATTGCTCCTTCAACGTCGTATTCTGCTCCGGTGCGTGTGTTCTTCAAGCCCTTTAAGGGTAAGAGACTTATGCTGAAGAGGGGAGGTTCTTGGGGTCCTAGGTGCGAGGTCGATCCCAATTCCACCTCGGTTCGAAGCGATCTGATTGGTTCGAATGCACCTGGTCTTTCGGCTCTTGAATTGCTTAAGACTTCTTCAGTTAATAGATATACAAGAGAAAGGAGCAGTATTGTGGTGATTGGTCTTAATGTTCACACTGCACCAGTAGAGTTGCGTGAGAAACTTGCCATTCCAGAAGCTCAATGGCCTCGGGCCATTGGTGAACTCTGTGCTCTGAACCATATAGAAGAAGCTGCTGTTCTTAGTACTTGTAATCGGATCGAGATTTATGTTGTAGCATTGTCGCAGCATCGTGGGGTTAAAGAAGTGACAGAATGGATGTCCAAGAGAAGTGGAATTCCTATGTCAGAGCTTTGTAAGCATAGGGTTCTATTATACAATAACGATGCGACTCAGCACCTCTTTGAAGTTTCTGCGGGTCTTGACTCTCTTGTGCTTGGAGAAGGTCAAATTCTTGCTCAGGTGAAACATGTTGTTAAAACAGGACAAGGTGTAGCTGGTTTTGACAGAAAAATTAGTGGGTTGTTCAAGCATGCAATCACTGTTGGAAAGCGGGTTAGAACCGAGACCAACATTTCCTCAGGGTCGGTTTCTGTCAGTTCGGCTGCTGTGGAGCTCGCACAGAAGAAACTTCCAGAATCTTCATATGCTACTGCAAAAGTGATGGTAGTTGGTGCAGGAAAAATGGGAAAACTTGTGATCAAACACTTGGTCGCAAAAGGATGTAGGAAGATGATGGTTGTGAACAGAACTCAGGACAGTGTCGATGCTCTAAGCAAGGAACTCAAAGATGTTGAGATAATCTACAAACCCCTCCCAGAGATTTTAGCGTGTGCTGCTGAAGTGGATGTCATCTTCACCTGCACTGCTTCAAAAACACCCTTATTCATGAAAGAACATGTAGGTATGCTCCCCTCTCCACGGACTGTAACAGGAAGACGTTTATTTGTCGATATATCAGTTCCAAGGAATGTCGAGCCATGTATATCAGATCTTGAGACCGTGTCTGTCTTCAATGTGGATGATCTCAAGGAAGTTGTGGCTGCTAACAAGGAGGATAGACTACAGAAAGTTCAGGAGGCTCAGTCGATAATTGCAGAAGAAATAAACAAATTTCAAGCATGGAAGGATTCCCTTGAAACTGTTCCTACCATCAAGAAGTTTAGAGCTTATGTTGAGAGGATTAGGGCTGCTGAACTAGACAAATGTTTGTCTAAGATGGGTGAAGACATCCCAAAGAAAAAGAAAGTAGCCATTAATGATCTTAGCTTGGGTATAGCTAACAAGCTACTTCATGGTCCAATACAGCACTTGAGATGTGATGGCAATGATAGCCGGACGTTGGATGAGATACTTCAGAATATGCATGCTATTAACAGAATGTTTGATCTTGAGACAGATTTGTCCGTCTTGGAAGATAAGATTAGAGCAAAAGTTGAACGTGGCCAGAAGTAG 1836 44.72 MGADDHKGGVGLKACHPSWSRDSSMVRGLTFPALKGLNFPSHHMAAAIGPLTSTKTSGAAFLVFLFLSMAAAVGGLMTGSTRPSVEFIAPSTSYSAPVRVFFKPFKGKRLMLKRGGSWGPRCEVDPNSTSVRSDLIGSNAPGLSALELLKTSSVNRYTRERSSIVVIGLNVHTAPVELREKLAIPEAQWPRAIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPMSELCKHRVLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAITVGKRVRTETNISSGSVSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMMVVNRTQDSVDALSKELKDVEIIYKPLPEILACAAEVDVIFTCTASKTPLFMKEHVGMLPSPRTVTGRRLFVDISVPRNVEPCISDLETVSVFNVDDLKEVVAANKEDRLQKVQEAQSIIAEEINKFQAWKDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEDKIRAKVERGQK 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25842326 25845089 - CaPI482276_09g015420.1 Cam09g1542 135871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1542 611 FunFam Glutamyl-tRNA reductase 322 480 - -
Cam09g1542 611 Pfam Shikimate / quinate 5-dehydrogenase 332 473 IPR006151 -
Cam09g1542 611 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 485 573 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 322 481 IPR036291 -
Cam09g1542 611 ProSitePatterns Glutamyl-tRNA reductase signature. 260 283 IPR018214 GO:0008883(InterPro)
Cam09g1542 611 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 110 607 - -
Cam09g1542 611 CDD NAD_bind_Glutamyl_tRNA_reduct 164 485 - -
Cam09g1542 611 Gene3D - 323 474 - -
Cam09g1542 611 NCBIfam glutamyl-tRNA reductase 164 572 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 167 317 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 FunFam Glutamyl-tRNA reductase 163 322 - -
Cam09g1542 611 Hamap Glutamyl-tRNA reductase [hemA]. 163 589 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 Gene3D - 162 322 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 487 591 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cam09g1542 611 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 163 319 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1542 K02492 - - csv:101208135 895.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1652 Cam-Chr8:22747217 Cam09g1542 Cam-Chr9:25842326 3.60E-205 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00657 Csa07g00638 . Cme01g00165 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01608 Cam09g1542 Cec09g1771 Cco09g1855 . . Cre01g0789 . . Chy01g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014173 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 23