Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1567 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGATGATAAATAG 924 48.05 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNDDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26431473 26437302 - CaPI482276_09g015670.1 Cam09g1567 135896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1567 307 MobiDBLite consensus disorder prediction 267 307 - -
Cam09g1567 307 MobiDBLite consensus disorder prediction 1 58 - -
Cam09g1567 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1567 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1567 307 PANTHER GATA TRANSCRIPTION FACTOR 28 38 302 IPR045280 GO:0006355(InterPro)
Cam09g1567 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam09g1567 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cam09g1567 307 MobiDBLite consensus disorder prediction 1 24 - -
Cam09g1567 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cam09g1567 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cam09g1567 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1567 307 SMART tify_2 86 121 IPR010399 -
Cam09g1567 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cam09g1567 307 Pfam tify domain 90 120 IPR010399 -
Cam09g1567 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1567 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1616 Cam-Chr8:22366638 Cam09g1567 Cam-Chr9:26431473 5.00E-63 dispersed
Cam09g0160 Cam-Chr9:2371740 Cam09g1567 Cam-Chr9:26431473 1.10E-55 dispersed
Cam09g1567 Cam-Chr9:26431473 Cam04g0853 Cam-Chr4:22739859 3.20E-06 dispersed
Cam09g1567 Cam-Chr9:26431473 Cam09g0532 Cam-Chr9:5398871 7.20E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g0160 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cam08g1616 . 242 465 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Cam09g1567 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cam09g0160 . 1 290 Tify Gene Family AT1G51600 59.0 3.7e-87 318.5
Cam09g1567 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Cam08g1616 . 236 445 Tify Gene Family AT1G51600 53.1 9.8e-48 187.6
Cam08g1616 . 242 465 Tify Gene Family AT4G24470 58.3 8.4e-66 247.7
Cam09g1567 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cam09g0160 . 1 290 Tify Gene Family AT1G51600 59.0 3.7e-87 318.5
Cam09g1567 . 86 303 Tify Gene Family AT1G51600 54.4 6.6e-52 201.4
Cam08g1616 . 236 445 Tify Gene Family AT1G51600 53.1 9.8e-48 187.6
Cam09g0160 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cam06g0650 . 1 180 Tify Gene Family AT4G14713 53.1 1.0e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52620 PF06203 CCT 1.60E-15 CL0281 Cam TF