Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g1567 | ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGATGATAAATAG | 924 | 48.05 | MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNDDK | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 26431473 | 26437302 | - | CaPI482276_09g015670.1 | Cam09g1567 | 135896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g1567 | 307 | MobiDBLite | consensus disorder prediction | 267 | 307 | - | - | |
Cam09g1567 | 307 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cam09g1567 | 307 | Pfam | GATA zinc finger | 225 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g1567 | 307 | ProSitePatterns | GATA-type zinc finger domain. | 225 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g1567 | 307 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 38 | 302 | IPR045280 | GO:0006355(InterPro) | |
Cam09g1567 | 307 | Gene3D | - | 221 | 286 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cam09g1567 | 307 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 222 | 271 | - | - | |
Cam09g1567 | 307 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cam09g1567 | 307 | ProSiteProfiles | Tify domain profile. | 86 | 121 | IPR010399 | - | |
Cam09g1567 | 307 | ProSiteProfiles | CCT domain profile. | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
Cam09g1567 | 307 | CDD | ZnF_GATA | 224 | 274 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g1567 | 307 | SMART | tify_2 | 86 | 121 | IPR010399 | - | |
Cam09g1567 | 307 | Pfam | CCT motif | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
Cam09g1567 | 307 | Pfam | tify domain | 90 | 120 | IPR010399 | - | |
Cam09g1567 | 307 | ProSiteProfiles | GATA-type zinc finger domain profile. | 224 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g1567 | 307 | SMART | GATA_3 | 219 | 272 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g1616 | Cam-Chr8:22366638 | Cam09g1567 | Cam-Chr9:26431473 | 5.00E-63 | dispersed | |
Cam09g0160 | Cam-Chr9:2371740 | Cam09g1567 | Cam-Chr9:26431473 | 1.10E-55 | dispersed | |
Cam09g1567 | Cam-Chr9:26431473 | Cam04g0853 | Cam-Chr4:22739859 | 3.20E-06 | dispersed | |
Cam09g1567 | Cam-Chr9:26431473 | Cam09g0532 | Cam-Chr9:5398871 | 7.20E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52620 | PF06203 | CCT | 1.60E-15 | CL0281 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g1567 | - | - | - | 0.0 |