Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1606 ATGGCATCTTGGAATCGTGATGAAGGCGAGGCAGAGGTTATGGAGAAACTTATGGAAATGAGGACAATGTATTTGGTGGATGTAGTTGTTATTGGAGTGCAAGAATCAATGCCCTTCCCCCTTTTCGTTCAGTCCTGCCGCAGCCACCCATCAAGAAAACCCACTCCGGCGTTTCTCCGTTCTGGTAGCAGCTCCGGCACTCACCCACCGGCGAACTCCCAGTGTCGGCCCTCACCCAACGGTTCTAAGAACGTTCATCCTTGCACAAATATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCTGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAATCTCTCGTTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTCCTGGATCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCTAAATGTGATGACATGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTATTAAGGAGGCCTTAGAAGATGATAGTGTTAGAAAAACTCTACAGATGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGGGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGGAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAATATAGACCAGCTGACAAAAGTATTTATAAATGCTCAATCAACCATGGTCTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCAAAGGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTTGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCACAAGATGCAAAAAGTAAATCAGGCGTTTGCCCGAACCTTGCATCTTCGTCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTTTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTTGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTGCTGTGTTAGTTTTTTCTCGGGTTCGTCACATGCTTGAAGGCTTCAAATGA 3447 42.15 MASWNRDEGEAEVMEKLMEMRTMYLVDVVVIGVQESMPFPLFVQSCRSHPSRKPTPAFLRSGSSSGTHPPANSQCRPSPNGSKNVHPCTNMPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIEEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLDLSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDMVSNLLVDSPCARSLIKEALEDDSVRKTLQMIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSGSDDHFQHFSSNEYVDYAFNIDQLTKVFINAQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDAKSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSAVLVFSRVRHMLEGFK 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27331983 27350622 + CaPI482276_09g016060.1 Cam09g1606 135935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1606 1148 Gene3D - 838 1085 IPR027417 -
Cam09g1606 1148 ProSitePatterns AAA-protein family signature. 983 1001 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam09g1606 1148 MobiDBLite consensus disorder prediction 57 114 - -
Cam09g1606 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1088 IPR027417 -
Cam09g1606 1148 FunFam spermatogenesis-associated protein 5-like protein 1 1014 1097 - -
Cam09g1606 1148 Pfam ATPase family associated with various cellular activities (AAA) 881 1012 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam09g1606 1148 Pfam ATPase family associated with various cellular activities (AAA) 530 659 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam09g1606 1148 Gene3D - 660 785 - -
Cam09g1606 1148 CDD RecA-like_CDC48_r2-like 852 1011 - -
Cam09g1606 1148 Gene3D - 1014 1084 - -
Cam09g1606 1148 MobiDBLite consensus disorder prediction 50 121 - -
Cam09g1606 1148 FunFam calmodulin-interacting protein 111 isoform X1 838 1013 - -
Cam09g1606 1148 Coils Coil 1062 1082 - -
Cam09g1606 1148 SMART AAA_5 526 662 IPR003593 GO:0016887(InterPro)
Cam09g1606 1148 SMART AAA_5 877 1015 IPR003593 GO:0016887(InterPro)
Cam09g1606 1148 CDD RecA-like_CDC48_NLV2_r1-like 495 658 - -
Cam09g1606 1148 Gene3D - 477 659 IPR027417 -
Cam09g1606 1148 PANTHER AAA-FAMILY ATPASE 165 1102 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Cam09g1606 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 715 IPR027417 -
Cam09g1606 1148 FunFam Putative vesicular transport protein (CDC48) 481 659 - -
Cam09g1606 1148 Pfam AAA+ lid domain 684 724 IPR041569 -
Cam09g1606 1148 Pfam AAA+ lid domain 1035 1080 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1300 Cam-Chr8:19292196 Cam09g1606 Cam-Chr9:27331983 2.10E-15 dispersed
Cam09g0613 Cam-Chr9:6072663 Cam09g1606 Cam-Chr9:27331983 2.70E-56 dispersed
Cam09g1606 Cam-Chr9:27331983 Cam10g1984 Cam-Chr10:33762594 3.60E-119 dispersed
Cam09g1606 Cam-Chr9:27331983 Cam04g0944 Cam-Chr4:23529110 5.60E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1606 - - - 0.0