Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1607 ATGGGCGTAGAGAAGGAATTGCTGAGATCTGGAACCGGCCCCAAACCGACCGCCGGACAGTTGGTCACTGTTCACTGCACCGGCTTCGGAAAAAATGGCAACCTATCTGAGAAATTTTGGAGCACAAAGGACCCTGGACAGAAGCCTTTCTCATTTAAAATTGGTCAAGGCTCAGTTATAAAAGGTTGGGATGAAGGTGTGCTTGGCATGCAAGTGGGAGAAGTTGCTCGTCTCCGGTGCTCCCCAGACTATGCTTATGGCCCTAGTGGGTTCCCTGCATGGGGCATTCAACCAAATTCAGTCTTGGCCAGTTCTGAATATCTGGGTTATGAAGCTGCTATTCGCTTGGCCTTTATGATGACTTGTGTTGTAACAAGTGCCGTTGAGAGGAAATGGACATCGAAGGCAGATGAGATAAAATCAATGGAAACAAAAGAAAAGAAGGGAGGTGATGAGGGGTTCCAAGGCCGTGAAGAAAAAGAAAAAAAGGATGGTGACTCGAAGATGGAGGAATCAAGGAAAATGGTCACGAAGAAGACAGAAAGAAGCATCACTTGA 558 46.95 MGVEKELLRSGTGPKPTAGQLVTVHCTGFGKNGNLSEKFWSTKDPGQKPFSFKIGQGSVIKGWDEGVLGMQVGEVARLRCSPDYAYGPSGFPAWGIQPNSVLASSEYLGYEAAIRLAFMMTCVVTSAVERKWTSKADEIKSMETKEKKGGDEGFQGREEKEKKDGDSKMEESRKMVTKKTERSIT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27366245 27371270 + CaPI482276_09g016070.1 Cam09g1607 135936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1607 185 FunFam Peptidylprolyl isomerase 1 108 - -
Cam09g1607 185 SUPERFAMILY FKBP-like 2 102 - -
Cam09g1607 185 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 109 IPR050689 GO:0005737(PANTHER)
Cam09g1607 185 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 102 IPR001179 GO:0003755(InterPro)
Cam09g1607 185 Gene3D - 1 104 IPR046357 GO:0003755(InterPro)
Cam09g1607 185 MobiDBLite consensus disorder prediction 137 185 - -
Cam09g1607 185 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 15 102 IPR001179 GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1607 K01802 - - csv:101203705 214.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0832 Cam-Chr9:8530765 Cam09g1607 Cam-Chr9:27366245 1.50E-09 dispersed
Cam09g1607 Cam-Chr9:27366245 Cam11g0706 Cam-Chr11:8686787 3.80E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01553 Cam09g1607 Cec09g1709 Cco09g1763 . . Cre09g1600 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009842 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 0 2 1 1 32