Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g1617 | ATGGACGACGACCCACCTCTTGCTCGTCTTGTCTTCTCCCGTCCGACCGACTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCATTTTGGGTGATTCGAAAGGTTCCATGAATGGAATTGAGAAATATTTCATCCATGTTCGTATTAACGTCACTGGCTCCCCGCTGGAATTGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACCGTAATCCGATCTGGGGCAATTAAGATGTATGAGGGTGAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTTCCATTCTGGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCTCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCGGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACGTATCATTTTCACATTGTTTATGTG | 1292 | 43.73 | MDDDPPLARLVFSRPTDYLRIFDDAAVWAHKIILGDSKGSMNGIEKYFIHVRINVTGSPLELPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQRIIFTLFM | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 27541343 | 27559731 | - | CaPI482276_09g016170.1 | Cam09g1617 | 135946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g1617 | 430 | Pfam | MCM P-loop domain | 259 | 424 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | Gene3D | - | 71 | 201 | IPR012340 | - | |
Cam09g1617 | 430 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 407 | 419 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 356 | 370 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 384 | 397 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 298 | 313 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 6 | 423 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
Cam09g1617 | 430 | SMART | mcm | 65 | 429 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
Cam09g1617 | 430 | Pfam | MCM OB domain | 71 | 201 | IPR033762 | - | |
Cam09g1617 | 430 | SUPERFAMILY | Nucleic acid-binding proteins | 3 | 208 | IPR012340 | - | |
Cam09g1617 | 430 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 267 | 420 | IPR027417 | - | |
Cam09g1617 | 430 | Gene3D | - | 239 | 427 | IPR027417 | - | |
Cam09g1617 | 430 | Gene3D | - | 96 | 152 | - | - | |
Cam09g1617 | 430 | ProSiteProfiles | MCM family domain profile. | 257 | 414 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g1617 | Cam-Chr9:27541343 | Cam10g1373 | Cam-Chr10:27295619 | 2.20E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g1617 | K10738 | - | csv:101205171 | 804.283 |