Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1648 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGATAGACCATCGAGTGGGTCGCTTTTTCTTTTTGATCGTAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACTGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCATCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTAACATCATTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGATCAATCAAAATTTTATTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGTTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGGGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGACCAGTTTCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTGGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCGACATATATACTGTTGGTTCAACGAAAGAATTATGTATGCATTTGCGATTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGAATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGACGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTGTTCATTGGGCAGCATCCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGTGGCAGACGTTTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTAAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCATTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGTCCAGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAAGTGAGGAAGCAATATAAAAAGATTGTTTGGTCAGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCACAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3306 42.62 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNGLLVNKQDADQSKFYFPHSSSNNLDAWSSVPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKGDFGSSLTMTSNWQVPFEDNTLSFSKEHADQFPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTVGSTKELCMHLRFERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQNDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGDGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTAVHWAASCGRELTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGVADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSFVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28137002 28154207 - CaPI482276_09g016480.1 Cam09g1648 135977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1648 1101 ProSiteProfiles IQ motif profile. 925 953 - -
Cam09g1648 1101 Gene3D Immunoglobulins 500 595 IPR013783 -
Cam09g1648 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cam09g1648 1101 MobiDBLite consensus disorder prediction 146 188 - -
Cam09g1648 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 974 IPR027417 -
Cam09g1648 1101 Pfam IPT/TIG domain 506 579 IPR002909 -
Cam09g1648 1101 Pfam Ankyrin repeats (3 copies) 714 803 IPR002110 GO:0005515(InterPro)
Cam09g1648 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam09g1648 1101 Gene3D - 924 971 - -
Cam09g1648 1101 ProSiteProfiles IQ motif profile. 947 971 - -
Cam09g1648 1101 Gene3D - 665 865 IPR036770 -
Cam09g1648 1101 SUPERFAMILY E set domains 507 591 IPR014756 -
Cam09g1648 1101 SUPERFAMILY Ankyrin repeat 687 803 IPR036770 -
Cam09g1648 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cam09g1648 1101 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515(InterPro)
Cam09g1648 1101 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515(InterPro)
Cam09g1648 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cam09g1648 1101 FunFam Calmodulin-binding transcription activator 2 500 595 - -
Cam09g1648 1101 SMART iq_5 946 968 IPR000048 GO:0005515(InterPro)
Cam09g1648 1101 SMART iq_5 923 945 IPR000048 GO:0005515(InterPro)
Cam09g1648 1101 FunFam Calmodulin-binding transcription activator 2 923 971 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1648 K21596 - - csv:101203707 1939.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0753 Cam-Chr4:21924049 Cam09g1648 Cam-Chr9:28137002 9.00E-159 dispersed
Cam06g0008 Cam-Chr6:1880328 Cam09g1648 Cam-Chr9:28137002 8.60E-43 dispersed
Cam09g1648 Cam-Chr9:28137002 Cam10g0871 Cam-Chr10:19560520 9.70E-146 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52623 PF03859 CG-1 5.40E-51 No_clan Cam TF