Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1685 ATGGACAAAAATATGGCCAGGAAACCTCAGGCGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCGGCTCCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTCGGGGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGTCACTTTGCAAGGATGTGCCAAAATAAAAGGGAGGCCAGTGGAGACAAGCCGACCTCGAAGGCCTTACCAGAAGCTACTCAAGGAGGGAAACAAAAGGCACGCGTCTTTGCACTGAAGAAGGAGGAGGCTGCAGATACGAACGCAATGGTTACAACGCCTTATTATCAAATGATCTGTGGAGAGATGAGAAGCCATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCCCATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGGGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCTCTTTTCACACCAATCAGTTTTGCCAATAATCCTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGGTACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCGACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGCGCGAGCTGCAAGTTGCTACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGCAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACCGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCACCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGGAGGCAATTACGTAGAGGAAGAACTGGAGCAGATAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCCACCACCGGAATAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 2292 44.55 MDKNMARKPQATHSRWEVGASSRFKRKSPPAPSDQTSKAHRLASGQATTLPLCGSCNKRHSGQCWLGQSICFKCGKEGHFARMCQNKREASGDKPTSKALPEATQGGKQKARVFALKKEEAADTNAMVTTPYYQMICGEMRSHEMGRATLMFSAFSPFLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCPWFHVTCDEKESVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLGKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISFANNPLHISPSAPPPPTRGTPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWRRKTQQDHFFDVAAEEDPEINLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEQPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLGGNYVEEELEQIIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSHHRNRTPQFIDSTSHIAPDVLSGPR 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29364832 29386192 + CaPI482276_09g016850.1 Cam09g1685 136014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1685 763 FunFam Somatic embryogenesis receptor-like kinase 1 512 729 - -
Cam09g1685 763 FunFam Somatic embryogenesis receptor kinase 1 172 357 - -
Cam09g1685 763 ProSiteProfiles Protein kinase domain profile. 435 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1685 763 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524(InterPro)
Cam09g1685 763 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 158 734 - -
Cam09g1685 763 Pfam Zinc knuckle 70 85 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam09g1685 763 MobiDBLite consensus disorder prediction 731 753 - -
Cam09g1685 763 SUPERFAMILY L domain-like 175 347 - -
Cam09g1685 763 Pfam Leucine rich repeat N-terminal domain 174 213 IPR013210 -
Cam09g1685 763 MobiDBLite consensus disorder prediction 729 763 - -
Cam09g1685 763 Pfam Leucine rich repeat 240 300 IPR001611 GO:0005515(InterPro)
Cam09g1685 763 Pfam Protein tyrosine and serine/threonine kinase 437 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g1685 763 Gene3D - 67 113 - -
Cam09g1685 763 ProSiteProfiles Zinc finger CCHC-type profile. 71 86 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam09g1685 763 Pfam Leucine Rich Repeat 313 329 IPR001611 GO:0005515(InterPro)
Cam09g1685 763 Gene3D Phosphorylase Kinase; domain 1 404 511 - -
Cam09g1685 763 MobiDBLite consensus disorder prediction 347 366 - -
Cam09g1685 763 SMART c2hcfinal6 70 86 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam09g1685 763 FunFam Somatic embryogenesis receptor kinase 1 404 511 - -
Cam09g1685 763 Gene3D Transferase(Phosphotransferase) domain 1 512 729 - -
Cam09g1685 763 MobiDBLite consensus disorder prediction 1 43 - -
Cam09g1685 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g1685 763 MobiDBLite consensus disorder prediction 28 43 - -
Cam09g1685 763 SUPERFAMILY Protein kinase-like (PK-like) 416 710 IPR011009 -
Cam09g1685 763 SMART serkin_6 435 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1685 763 Gene3D Ribonuclease Inhibitor 173 352 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0842 Cam-Chr2:10945773 Cam09g1685 Cam-Chr9:29364832 2.50E-52 dispersed
Cam03g0939 Cam-Chr3:12384003 Cam09g1685 Cam-Chr9:29364832 2.80E-21 dispersed
Cam07g0841 Cam-Chr7:21100369 Cam09g1685 Cam-Chr9:29364832 9.50E-20 dispersed
Cam07g0842 Cam-Chr7:21100594 Cam09g1685 Cam-Chr9:29364832 5.40E-15 dispersed
Cam09g1685 Cam-Chr9:29364832 Cam10g0891 Cam-Chr10:20022795 6.00E-211 dispersed
Cam11g0796 Cam-Chr11:10076109 Cam09g1685 Cam-Chr9:29364832 2.40E-16 dispersed
Cam09g1685 Cam-Chr9:29364832 Cam07g1742 Cam-Chr7:32128257 1.40E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85450 PF00069 Pkinase 7.80E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1685 K13416 - csv:101216386 1009.98