Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1803 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACAACAGCAGCCGTCGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAGCGACCTCGCAGACAAGGGTCAACGGACGAGGTTAAAACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACGGCCGATAAAGTTTTGCAGAATTATAATGGTGCTATAATGCCTAACACAGAGCTGCCTTTCCGTCTCAATTGGGCAACTTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAGGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGACATGCAAATGGCATGGCCGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTATCTGTGAAAATTCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGCGGGCAAGGCTACGGTGGATATGGTGGTGGCTACTACTCCGTACCACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGATCATCTTGA 1308 46.18 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGYGGGYYSVPQHQDTNMHATAAAVNGSS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32361860 32371880 + CaPI482276_09g018030.1 Cam09g1803 136132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1803 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 383 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cam09g1803 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 CDD RRM2_SECp43_like 191 270 - -
Cam09g1803 435 Pfam RNA recognition motif 312 375 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 Pfam RNA recognition motif 101 170 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 Pfam RNA recognition motif 194 264 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 FunFam Polyadenylate-binding protein RBP47B 180 282 - -
Cam09g1803 435 MobiDBLite consensus disorder prediction 64 91 - -
Cam09g1803 435 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Cam09g1803 435 Gene3D - 293 418 IPR012677 -
Cam09g1803 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 382 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 SUPERFAMILY RNA-binding domain, RBD 174 284 IPR035979 GO:0003676(InterPro)
Cam09g1803 435 Gene3D - 57 190 IPR012677 -
Cam09g1803 435 SUPERFAMILY RNA-binding domain, RBD 302 412 IPR035979 GO:0003676(InterPro)
Cam09g1803 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 MobiDBLite consensus disorder prediction 64 97 - -
Cam09g1803 435 SUPERFAMILY RNA-binding domain, RBD 63 182 IPR035979 GO:0003676(InterPro)
Cam09g1803 435 CDD RRM1_SECp43_like 100 180 - -
Cam09g1803 435 FunFam Polyadenylate-binding protein RBP47 292 413 - -
Cam09g1803 435 Gene3D - 191 268 IPR012677 -
Cam09g1803 435 MobiDBLite consensus disorder prediction 1 25 - -
Cam09g1803 435 SMART rrm1_1 311 378 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 SMART rrm1_1 100 173 IPR000504 GO:0003723(InterPro)
Cam09g1803 435 SMART rrm1_1 193 267 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1803 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0476 Cam-Chr3:5743413 Cam09g1803 Cam-Chr9:32361860 1.70E-103 dispersed
Cam05g2168 Cam-Chr5:30067306 Cam09g1803 Cam-Chr9:32361860 2.50E-123 dispersed
Cam05g2169 Cam-Chr5:30080579 Cam09g1803 Cam-Chr9:32361860 3.20E-121 dispersed
Cam08g2036 Cam-Chr8:25997930 Cam09g1803 Cam-Chr9:32361860 1.20E-15 dispersed
Cam09g1803 Cam-Chr9:32361860 Cam11g0144 Cam-Chr11:3119910 6.60E-29 dispersed
Cam07g1502 Cam-Chr7:29651971 Cam09g1803 Cam-Chr9:32361860 5.50E-08 transposed
Cam11g0281 Cam-Chr11:4273735 Cam09g1803 Cam-Chr9:32361860 1.10E-07 transposed
Cam02g0642 Cam-Chr2:7421315 Cam09g1803 Cam-Chr9:32361860 1.30E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117