Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1824 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGACGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGTGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1239 41.65 MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32701576 32704560 + CaPI482276_09g018240.1 Cam09g1824 136153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1824 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Cam09g1824 412 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cam09g1824 412 Gene3D - 263 383 IPR015300 -
Cam09g1824 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 CDD B3_DNA 284 379 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 Pfam B3 DNA binding domain 288 379 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 PANTHER B3 DOMAIN-CONTAINING 17 366 IPR050655 -
Cam09g1824 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 SMART B3_2 286 381 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Cam09g1824 412 Gene3D - 13 114 IPR015300 -
Cam09g1824 412 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1363 Cam-Chr2:26219191 Cam09g1824 Cam-Chr9:32701576 3.00E-22 dispersed
Cam02g1365 Cam-Chr2:26247706 Cam09g1824 Cam-Chr9:32701576 1.20E-27 dispersed
Cam09g1824 Cam-Chr9:32701576 Cam09g1826 Cam-Chr9:32720133 7.30E-46 proximal
Cam07g1737 Cam-Chr7:32083197 Cam09g1824 Cam-Chr9:32701576 1.40E-29 transposed
Cam01g1691 Cam-Chr1:30503885 Cam09g1824 Cam-Chr9:32701576 2.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52628 PF02362 B3 5.70E-18 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1824 - - - 0.0