Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1830 ATGGCTGGGCTTCTGAAAAAGTTTTTCCATGAGAAGCCTTCTTCTCCTGTTAATGATGAGGATTTTACAGCTGAATATTCTTTTGCCATGGAGTATACAGGTCCCGGAATCAATTACGAGATTCCCCGTGCAGTTCCTATCAATGTTGATTATATTCCAACTGCTTCTGTTGTTCTTTCATCATCTCAGTTCGGCGATGATTTATCATCGCTGCCTGTGATACAACCCATTGTCAAGAAACTAAAGAGGGGCTCAAGTTCCAGCCCCAATTCTGTAATTTCTTCAACCTCAGAAGTCCAGGAAGATGGACCTGTTTGCCTCCATGCCAATAAGGAAGATAATGGGGAAGATGATTTTAATATCAATTCGTGTGATGGAGTTGAAACTTCGGGTGAACTTGAGAATTTCAATCAGCTGAAGGGAAGATTAGAAGGAAGGTTAGAATCATTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTATACGAATTCCAGCGACTCGGAATCGGTAGAATCTGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGAGGAAGAGGAAATTGACAATGGAACTCAGCCTCGGCATGGCAGAAGGCCATCAGCTGTTACCTTCCTTGATCCCCATTTGAGCAGCACAATTTCTGAAGAGGCAGAATCAAGTCAATTTGAGGGTGAAAGTATCCAAGAGATGCCTAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTCAAAGGAAACCGTTTCACTGAAAAGGAAGTATGTATAGTTTGTGGAGCCAAATATTGTTTTGACTGTATAATAAGAGCAATGGGATCAATGCCAGAAGGAAGGAAGTGTATCTCTTGCATTGGGTTTAGGATTGACGAATCAAGAAGAGGGAACCTGGGTAAAAGCTCTAAAGTGCTCAAGAGGTTGCTTGCTGATTCTGAAGTTAAGAGCACAATGTTGCGTGAGAAAGAGTGTGAAATAAATCAATTACCAGCAAGACTTGTTTACGTCAATGATGATCCTTTAAGTCGACAGGAGCTGCTTATATTGCGAAGTTGTCGAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGATGTGGGCCGAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACAAACGTGTGCATTAATAATCGAGAGATCACTAGAAAAGAGCTCCGGATACTGAAGATGGCTGGAGTACCTTGTGAAGGAAGACCTTCGTTTTGGGTTAGTGCAGATGGATCCTATCAGGAAGAAGGAATGAACAATGGGGGGAAAATATGGGACAAGACTAGAACGAAGCTTGCATGTGCCCTTTTTTCTTTGCCTATTCCTTCTAATTCTGTTCATACTGGAGAGGAAATAGAGGACGGAGCTAGATTTCTTTCTTCCGAGCAGCAAACGATCCATAAACTTCTACTTGTTGGCCACAAGAAATCTGGCACGAGTACCATATTCAAGCAGGCCAAACAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAACCATTAAGTTCCTAATTCAAAGGAACTTGTATTGGTATCTTAGTATACTACTGGAAGGACGGGAACGTTTTGAAGAAGAGAGCTTGATGGATGAGAAAAATAAACAACCAGTGAATGATCCATCCACCTCATCAGCATCAGGGAATGAAAATCAGTTGGAGTGTAAGACCACCTATTCCCTTGGCCCTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTTGTGGTGTCGGGTAACTTCGAAACCATATTCCCGGCTGCCACTCGTGTGTATGCCCAATTAGTGGAAGAGTTATTGAAGGATGAAGCCTTCCAAGCCACATACAGTAGAAGGAACGAACTAGAACTGCTCCCAAGAGTTGCTACTTATTTCCTTGATCGGGCGATTGACATTTCAAGTATAGATTATGACCCTTCTGACAATGATATCTTGTACGCCGAGGGAATCTCCTTGTGTAACAGTCTCAGTACCATGGAGTTCAAGTTCCCCGAGTCACGACAAGACTCCATTCTCGATCCTCCTTATCAGCACGATTTGTCCATAAGGTACCAGCTGATTCGAGCCCATTCCAGTACTCTGGGAGAGAACTGCAAATGGTTGGAGATGTTTGAAGACATGAGCATAATCTTATTTTGCGTTGATTTGACCGAATATGATGAATTTGACGAGGATGATAACGGAGTTCTAATGAACCGGATGATCACAAGCAAGGAACTCTTTAAAAGCATCGTGACACATCGAGCCTCGAGAGGAAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTATTTGAAGAAAAGATCATCCAAGTCCCTCTTGCCCAATGTGAGTGGTTTGTTGACTTCAATCCAGTGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACATTGGCCCAACGAGCGTTTCAGTACATAGCAGTGAAGTTCAAGAGATTGTTCTTTTCTTTGACAGACAAAAAGTTGTTTGTTTCACAAACTACAGGGATGGAGCCTGAAAATGTCAATGCAGCTCTGAGATATGCAAGAGAGATAATCAAATGGCAAGTAGACAAACCTAACATCAGCACTACTGAAATTTCAAGTACCAGTGTTGATGCAAGCAGCTTCACATAG 2709 42.52 MAGLLKKFFHEKPSSPVNDEDFTAEYSFAMEYTGPGINYEIPRAVPINVDYIPTASVVLSSSQFGDDLSSLPVIQPIVKKLKRGSSSSPNSVISSTSEVQEDGPVCLHANKEDNGEDDFNINSCDGVETSGELENFNQLKGRLEGRLESLEIKNEEDFQGYTNSSDSESVESGLSSSSGIFAVREEEEIDNGTQPRHGRRPSAVTFLDPHLSSTISEEAESSQFEGESIQEMPRAERKGKKGSCYYCLKGNRFTEKEVCIVCGAKYCFDCIIRAMGSMPEGRKCISCIGFRIDESRRGNLGKSSKVLKRLLADSEVKSTMLREKECEINQLPARLVYVNDDPLSRQELLILRSCRKPPKNLKPGRYWYDKESGFWGKEGCGPSQIVSSQLEVGGRIKRNASNGNTNVCINNREITRKELRILKMAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTKLACALFSLPIPSNSVHTGEEIEDGARFLSSEQQTIHKLLLVGHKKSGTSTIFKQAKQIYKVPFSDDERQTIKFLIQRNLYWYLSILLEGRERFEEESLMDEKNKQPVNDPSTSSASGNENQLECKTTYSLGPKLKGFADWLLQVVVSGNFETIFPAATRVYAQLVEELLKDEAFQATYSRRNELELLPRVATYFLDRAIDISSIDYDPSDNDILYAEGISLCNSLSTMEFKFPESRQDSILDPPYQHDLSIRYQLIRAHSSTLGENCKWLEMFEDMSIILFCVDLTEYDEFDEDDNGVLMNRMITSKELFKSIVTHRASRGKNFLLILNKFDLFEEKIIQVPLAQCEWFVDFNPVITGRSSSSTNPTLAQRAFQYIAVKFKRLFFSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISTTEISSTSVDASSFT 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32792560 32797675 - CaPI482276_09g018300.1 Cam09g1830 136159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1830 902 FunFam Guanine nucleotide-binding protein G(k) subunit alpha 705 886 - -
Cam09g1830 902 PRINTS Alpha G protein (transducin) signature 498 513 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 PRINTS Alpha G protein (transducin) signature 737 765 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 PRINTS Alpha G protein (transducin) signature 785 794 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 FunFam Extra-large guanine nucleotide-binding protein 2 531 680 - -
Cam09g1830 902 Pfam G-protein alpha subunit 490 877 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 ProSiteProfiles G-alpha domain profile. 495 892 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 MobiDBLite consensus disorder prediction 558 581 - -
Cam09g1830 902 Gene3D - 525 678 IPR011025 GO:0007165(InterPro)
Cam09g1830 902 CDD G-alpha 497 880 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 SMART galpha_1 476 891 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cam09g1830 902 Coils Coil 133 153 - -
Cam09g1830 902 Gene3D - 686 883 IPR027417 -
Cam09g1830 902 PANTHER OS01G0977800 PROTEIN 11 471 IPR053057 -
Cam09g1830 902 MobiDBLite consensus disorder prediction 157 177 - -
Cam09g1830 902 MobiDBLite consensus disorder prediction 565 581 - -
Cam09g1830 902 SUPERFAMILY Transducin (alpha subunit), insertion domain 524 677 IPR011025 GO:0007165(InterPro)
Cam09g1830 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 880 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1830 Cam-Chr9:32792560 Cam10g0120 Cam-Chr10:2777938 7.90E-178 dispersed
Cam05g1743 Cam-Chr5:26046952 Cam09g1830 Cam-Chr9:32792560 7.40E-40 transposed
Cam01g1689 Cam-Chr1:30480814 Cam09g1830 Cam-Chr9:32792560 5.60E-236 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42