Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1833 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCCCCTTCCTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGTCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACAATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCGGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1212 53.96 MPTAPSPSPSPSPSSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32843685 32844896 - CaPI482276_09g018330.1 Cam09g1833 136162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1833 403 FunFam RING-H2 finger protein ATL65 120 195 - -
Cam09g1833 403 SUPERFAMILY RING/U-box 145 197 - -
Cam09g1833 403 MobiDBLite consensus disorder prediction 1 22 - -
Cam09g1833 403 Pfam Ring finger domain 148 191 IPR001841 -
Cam09g1833 403 MobiDBLite consensus disorder prediction 350 384 - -
Cam09g1833 403 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Cam09g1833 403 SMART ring_2 149 190 IPR001841 -
Cam09g1833 403 CDD RING-H2_EL5-like 148 191 - -
Cam09g1833 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Cam09g1833 403 PANTHER RING-H2 FINGER PROTEIN ATL16 17 214 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cam09g1833 403 MobiDBLite consensus disorder prediction 350 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1833 Cam-Chr9:32843685 Cam09g1932 Cam-Chr9:34014043 1.40E-17 dispersed
Cam09g1833 Cam-Chr9:32843685 Cam05g0495 Cam-Chr5:4383717 1.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1833 - - - 0.0