Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1872 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.27 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33294763 33295665 + CaPI482276_09g018720.1 Cam09g1872 136201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1872 300 MobiDBLite consensus disorder prediction 136 150 - -
Cam09g1872 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cam09g1872 300 Gene3D - 185 259 - -
Cam09g1872 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam09g1872 300 MobiDBLite consensus disorder prediction 1 38 - -
Cam09g1872 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 256 275 - -
Cam09g1872 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 130 159 - -
Cam09g1872 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 254 300 - -
Cam09g1872 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cam09g1872 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1872 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1872 Cam-Chr9:33294763 Cam10g0839 Cam-Chr10:18645689 8.50E-36 dispersed
Cam09g1872 Cam-Chr9:33294763 Cam09g1873 Cam-Chr9:33307003 7.80E-13 tandem
Cam10g1180 Cam-Chr10:25138602 Cam09g1872 Cam-Chr9:33294763 5.90E-82 wgd
Cam04g1259 Cam-Chr4:26541611 Cam09g1872 Cam-Chr9:33294763 1.30E-12 wgd
Cam05g2628 Cam-Chr5:33790417 Cam09g1872 Cam-Chr9:33294763 3.90E-43 wgd
Cam06g1767 Cam-Chr6:28847832 Cam09g1872 Cam-Chr9:33294763 6.30E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52633 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cam TF