Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1872 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAATGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.27 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33294763 33295665 + CaPI482276_09g018720.1 Cam09g1872 136201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1872 300 MobiDBLite consensus disorder prediction 136 150 - -
Cam09g1872 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cam09g1872 300 Gene3D - 185 259 - -
Cam09g1872 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam09g1872 300 MobiDBLite consensus disorder prediction 1 38 - -
Cam09g1872 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 256 275 - -
Cam09g1872 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 130 159 - -
Cam09g1872 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cam09g1872 300 MobiDBLite consensus disorder prediction 254 300 - -
Cam09g1872 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cam09g1872 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1872 Cam-Chr9:33294763 Cam10g0839 Cam-Chr10:18645689 8.50E-36 dispersed
Cam09g1872 Cam-Chr9:33294763 Cam09g1873 Cam-Chr9:33307003 7.80E-13 tandem
Cam10g1180 Cam-Chr10:25138602 Cam09g1872 Cam-Chr9:33294763 5.90E-82 wgd
Cam04g1259 Cam-Chr4:26541611 Cam09g1872 Cam-Chr9:33294763 1.30E-12 wgd
Cam05g2628 Cam-Chr5:33790417 Cam09g1872 Cam-Chr9:33294763 3.90E-43 wgd
Cam06g1767 Cam-Chr6:28847832 Cam09g1872 Cam-Chr9:33294763 6.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52633 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1872 - - - 0.0