Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1873 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGAGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGATGAAGGGACGACCGCTGCACTGACTTGCGCGGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.23 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33307003 33307293 + CaPI482276_09g018730.1 Cam09g1873 136202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1873 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cam09g1873 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cam09g1873 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam09g1873 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1259 Cam-Chr4:26541611 Cam09g1873 Cam-Chr9:33307003 2.70E-26 dispersed
Cam06g1767 Cam-Chr6:28847832 Cam09g1873 Cam-Chr9:33307003 1.40E-26 dispersed
Cam09g1873 Cam-Chr9:33307003 Cam11g0009 Cam-Chr11:1609440 4.80E-17 dispersed
Cam09g1872 Cam-Chr9:33294763 Cam09g1873 Cam-Chr9:33307003 7.80E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52634 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1873 - - - 0.0