Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1883 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATTCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATATTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.42 MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQIFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33513815 33516628 + CaPI482276_09g018830.1 Cam09g1883 136212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1883 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam09g1883 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Cam09g1883 304 Gene3D - 77 144 - -
Cam09g1883 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Cam09g1883 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Cam09g1883 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Cam09g1883 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g1883 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Cam09g1883 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 206 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cam09g1883 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cam09g1883 304 Coils Coil 128 169 - -
Cam09g1883 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Cam09g1883 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1903 Cam-Chr1:32505289 Cam09g1883 Cam-Chr9:33513815 3.30E-25 dispersed
Cam09g1883 Cam-Chr9:33513815 Cam10g0830 Cam-Chr10:18293717 3.60E-26 dispersed
Cam01g1489 Cam-Chr1:28446946 Cam09g1883 Cam-Chr9:33513815 2.00E-25 wgd
Cam05g2646 Cam-Chr5:33938861 Cam09g1883 Cam-Chr9:33513815 3.40E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52637 PF00046 Homeodomain 2.90E-15 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1883 K09338 - csv:101212093 563.918