Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1885 ATGGGTTTGGCACCTAATGATTCCAAGCTCGAGACATGGATTGAGGGGAAGTCAAAAACAGCTAGCGAGAAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACCCATTGCGATAGTAAACCTAAACTTGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGTTCGTCCACGCCCAAGCTCAGTGCAGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCCGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTCGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCTATTAGATTGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTATTAGATGCGGACTACAATGCTAAACTCTCAGATTTTGGACTCGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTCTACAGTTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCCTTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCTCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCCGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTATGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAGGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAACAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGGACGCAGTCGATTCACCGAAACCTGACAGGAGATAACCTTAATAACCAACTCGAGCAAATTTCGGGTGGGATATGGAGGAGAGGGGATGAAGTTAAAAGGAAGGCTATATATATCGACTCGGAGGTGAAGTTCGATGCTGATAACATAGGTTGCGGGGGGGAACCACATCTGATCGAAATATCAACACAAGGCCACTTTCTTTCTTTCTGTTAA 1566 44.25 MGLAPNDSKLETWIEGKSKTASEKKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKPKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPMMSEVVEILKPLPNLKDMASSSYYFQTMQTDRARSNPNAKSVVRTQSIHRNLTGDNLNNQLEQISGGIWRRGDEVKRKAIYIDSEVKFDADNIGCGGEPHLIEISTQGHFLSFC 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33533321 33538625 - CaPI482276_09g018850.1 Cam09g1885 136214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1885 521 CDD STKc_IRAK 142 419 - -
Cam09g1885 521 SUPERFAMILY Protein kinase-like (PK-like) 113 416 IPR011009 -
Cam09g1885 521 Gene3D Phosphorylase Kinase; domain 1 111 221 - -
Cam09g1885 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g1885 521 FunFam Serine/threonine-protein kinase BIK1 103 221 - -
Cam09g1885 521 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1885 521 Gene3D Transferase(Phosphotransferase) domain 1 222 440 - -
Cam09g1885 521 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524(InterPro)
Cam09g1885 521 FunFam Probable serine/threonine-protein kinase PBL8 222 437 - -
Cam09g1885 521 PANTHER OS01G0588500 PROTEIN-RELATED 107 420 IPR050823 -
Cam09g1885 521 MobiDBLite consensus disorder prediction 12 35 - -
Cam09g1885 521 Pfam Protein tyrosine and serine/threonine kinase 140 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g1885 521 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0643 Cam-Chr4:20438251 Cam09g1885 Cam-Chr9:33533321 1.10E-54 dispersed
Cam09g1264 Cam-Chr9:14828094 Cam09g1885 Cam-Chr9:33533321 1.30E-91 dispersed
Cam09g1885 Cam-Chr9:33533321 Cam09g2015 Cam-Chr9:34761146 4.50E-125 dispersed
Cam06g1201 Cam-Chr6:23179764 Cam09g1885 Cam-Chr9:33533321 7.50E-140 transposed
Cam11g0333 Cam-Chr11:4913419 Cam09g1885 Cam-Chr9:33533321 6.80E-143 transposed
Cam05g2656 Cam-Chr5:34027167 Cam09g1885 Cam-Chr9:33533321 6.20E-171 wgd
Cam08g1343 Cam-Chr8:19722531 Cam09g1885 Cam-Chr9:33533321 2.10E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85455 PF07714 PK_Tyr_Ser-Thr 4.70E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1885 - - - 0.0