Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1925 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATGCTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTATTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAGACTGACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTCTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCAAAAACATCAAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 41.93 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIIYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLRLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33965164 33967452 + CaPI482276_09g019250.1 Cam09g1925 136254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1925 666 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 665 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cam09g1925 666 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Cam09g1925 666 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Cam09g1925 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Cam09g1925 666 Coils Coil 600 620 - -
Cam09g1925 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1925 K20887 - - csv:101208151 1245.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2838 Cam-Chr5:35463460 Cam09g1925 Cam-Chr9:33965164 4.20E-272 dispersed
Cam09g0834 Cam-Chr9:8546514 Cam09g1925 Cam-Chr9:33965164 2.20E-239 dispersed
Cam09g1925 Cam-Chr9:33965164 Cam10g1905 Cam-Chr10:33128866 3.20E-107 dispersed
Cam09g1925 Cam-Chr9:33965164 Cam08g1257 Cam-Chr8:18897857 1.80E-110 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g1824 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
Cam05g2838 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cam09g1925 . 6 666 REM Transcription Factor Family AT2G24630 69.5 2.8e-268 921.4
Cam05g2848 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Cam08g2147 . 5 700 REM Transcription Factor Family AT2G24630 66.0 4.1e-259 891.0
Cam09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cam05g2838 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cam09g1925 . 6 666 REM Transcription Factor Family AT2G24630 69.5 2.8e-268 921.4
Cam05g2848 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Cam08g2147 . 5 700 REM Transcription Factor Family AT2G24630 66.0 4.1e-259 891.0
Cam09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cam05g2838 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cam09g1925 . 6 666 REM Transcription Factor Family AT2G24630 69.5 2.8e-268 921.4
Cam05g2848 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.2e-262 900.6
Cam08g2147 . 5 700 REM Transcription Factor Family AT2G24630 66.0 4.1e-259 891.0
Cam09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cam09g1824 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33