Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1945 ATGGATCATTCACTCGAGACGTCGAGGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATTTGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATCGATAGCGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGACATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTTTGTCGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCCTCATGATAAGGGATACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGAACCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCGAGGATTTGA 1035 42.61 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECKNIFATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPLKQVQKKIQDILYNGGEKARILVGHFVEDDLKRLQIGYPSLMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQEPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34129146 34132989 - CaPI482276_09g019450.1 Cam09g1945 136274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1945 344 SUPERFAMILY Ribonuclease H-like 145 291 IPR012337 -
Cam09g1945 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Cam09g1945 344 SMART exoiiiendus 130 295 IPR013520 -
Cam09g1945 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cam09g1945 344 Gene3D - 128 309 IPR036397 GO:0003676(InterPro)
Cam09g1945 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Cam09g1945 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0389 Cam-Chr4:14631601 Cam09g1945 Cam-Chr9:34129146 6.70E-80 dispersed
Cam09g1944 Cam-Chr9:34108882 Cam09g1945 Cam-Chr9:34129146 8.10E-86 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1945 - - - 0.0