Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1974 ATGTTTGTCGATACGATTGCTAAGTGGGCAAAGAAAGATGTGAGCTTCAAACCAACTTCTGGAGGAAAGAAGCATCTCAAAAGGTTTTTGTTGATAGAAAGGAAAAAAAAAAAAAAGAATATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGTTGTGTCGGGGCCATCTCCGTTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTTGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA 612 45.59 MFVDTIAKWAKKDVSFKPTSGGKKHLKRFLLIERKKKKKNMASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34402756 34407043 - CaPI482276_09g019740.1 Cam09g1974 136303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1974 203 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Cam09g1974 203 Pfam Lateral organ boundaries (LOB) domain 50 147 IPR004883 -
Cam09g1974 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 158 - -
Cam09g1974 203 Coils Coil 129 149 - -
Cam09g1974 203 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g1974 Cam-Chr9:34402756 Cam11g1136 Cam-Chr11:22193914 3.40E-44 dispersed
Cam08g2176 Cam-Chr8:27151370 Cam09g1974 Cam-Chr9:34402756 4.20E-17 transposed
Cam01g1406 Cam-Chr1:27604745 Cam09g1974 Cam-Chr9:34402756 1.50E-45 wgd
Cam10g1288 Cam-Chr10:26329080 Cam09g1974 Cam-Chr9:34402756 2.70E-59 wgd
Cam06g1875 Cam-Chr6:29809294 Cam09g1974 Cam-Chr9:34402756 8.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52642 PF03195 LOB 1.70E-41 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1974 - - - 0.0