Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1993 ATGGGCTTCCCCTTTGTTGGAGAGACTCTCAGTTTTCTCAAACCTCATCATTCTAACTCAATTGGAACCTTCCTTCAACACCATTGCTCCAGGTATGGGAAGGTTTTCAAATCTCATCTATTCGGTTGGCCGGCGATAGTGTCATGTGATCGAGAGCTTAACGTCTTCATTCTTCAGAACGACGATAAGCTTTTCAAAGTGAGTTATCCAAAAGCCATGCATGGCATTCTCGGAACAAATTCTTTGATTATCGCCGCCGGCCACACCCACCGGAAGCTCCGAAACGTCGTCGTTAGCTTCACCAGCTGGTGCAAATCCAGACCATCTTTCCTTCACTCCCTCCATAATCTCTCTATCTCTTTAATGGACTCTTGGAGATCCCAAACTCAACTCCTTTTCTGCAAAGAACTCAAAATGTTTGCTTTAAGCGTTATGGTAAAGGAGCTATTGGGCATCAAAGCAAACGAGTCCATAGGATCAAAGATATTAGAAGAGTTCGAAACGTATATGAAAGGCTTTGTTTCTTTACCTTTAAATTTGCCAGGGACTCCCTATTCTAAAGCTGTTAAGGCTAGGGGGAGACTTTCTTACATTGTGAAAGAGATGATGAGAGAGAGGAGAAGGAGGGGATTATTGGAAGGGAATGATGAGGATTTTCTACAAGTGATAATGTCAAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTTTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTCATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCTAATGTTCTTGCAAAATTAAAGGAAGAACATGAAGCAATAAGAATTGGAAAAAGGAATGGAGAATATCTCAATTTGGAAGATTATAAGCAAATGGATTTCACATGCAATGTGATATTCGAAGCCATGAGATGTGGGAATGTGGTGAAGTTTTTACATAGAGAAGCTCTTGCAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTCCATCCAAATCCTCAACAATTTAATCCTTGGAGATGGACTCTTACCAACAAAGCATGCATGTACTCTCGACCAATATCTCGCCGCCATCGCCTTCTGGGATTTGAGATCGTTGGTCGGAGCTCGACATCAGCCGCCACTGGTAGTCGATCGCCGCATCACCGTCGCATGCACCACGCCCGACTCCATCTTTTGCCTAGACGCACGTGGAAGCTTTGGATTGCGTTGTCGGCACCTTCACCCATGACCACCGCAAAGTCTTTGGCGCCGCCCCCAGTTTATTGTCCTCTTCTTCTCCGGCGAGTATCTCCGGTGACCGGTGGTAGTGTGTGCGCTGAATCCAGCCAGCGACCTGCACCGTTTACCCGCACGGACAGTGACCCTCCCGGCGGCGAATTAGATCGCTTTTTTGCGGCTTACATCAGCAGCGGCATCTGGACGGCGGTGAATCACACGTTTACTCCTCCACGACCATTGCGCCCCGGCGAACGCCTCCTCTCGACTAAGATGTCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACCGACTGCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGAAAAAACAAAAAGAAGCAGTTATTGATGGAAGGTGTAGATGTCACGGAAATGAAAGAGGTAGGATCCGTTCAGCTGGGGGAAAGCAACATAAACTCCGATAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGAGTACTCAACAATATGTAGAGGAGAGCTCTATCAAGGATGAGGCAGGAGAATATGAAAATAGAGCAGAGACTTTTATGAAAGAGGGCAGTCCTTTCTCTAATGGTGGAAGTGAGAAAATTTTCGAAAAGAGGAAAATTGCATTGGAAGATGCTGAGAATGAAAGGACTGACAGCATGGTCAGAGAAAACTCTGAAGAGAAGATTCTAGAGTCTAACAATGGAAAAGCAGATCAAAGGAATATTAAGAGGAAGAAGCGGCTCTTAAAGGAAGCAGCAAATGCAGATATGCGTGGTATTTGTTACTTGAGCCGAGTTCCTCCACACATGGATCCTTTGAGACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGATGCTGCCAGTCAAGTACAACGAAAGCGTGCAGGAGGCTTTCGAGGACAGTTTTTTTCAGAAGGGTGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGTGAACAGATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTCACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAACTGGCTTTAGAAATTTCTGCTGCCAAGAGGGAAAGGGATTTCTATCTTGCGAAAGTGGATAAATCACGTGCATTGAATTCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAAAAGATTCAGAAATGAATTCTGCACTTGCTGATAGCCAGAAACTTCCAAAGTTGATCCGCAGCTTCCCACAAACACAACCAGTTGCACATTCTGCAGTACAAAACAAACAGAGACTATCTACAAATGTCCTGGCTGGGGTATTTGGAAGTTCCTAG 2691 43.89 MGFPFVGETLSFLKPHHSNSIGTFLQHHCSRYGKVFKSHLFGWPAIVSCDRELNVFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGHTHRKLRNVVVSFTSWCKSRPSFLHSLHNLSISLMDSWRSQTQLLFCKELKMFALSVMVKELLGIKANESIGSKILEEFETYMKGFVSLPLNLPGTPYSKAVKARGRLSYIVKEMMRERRRRGLLEGNDEDFLQVIMSNWKLSDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHEAIRIGKRNGEYLNLEDYKQMDFTCNVIFEAMRCGNVVKFLHREALADVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQQFNPWRWTLTNKACMYSRPISRRHRLLGFEIVGRSSTSAATGSRSPHHRRMHHARLHLLPRRTWKLWIALSAPSPMTTAKSLAPPPVYCPLLLRRVSPVTGGSVCAESSQRPAPFTRTDSDPPGGELDRFFAAYISSGIWTAVNHTFTPPRPLRPGERLLSTKMSKEESFEVNLTTDCSPESSKKRAKRRKNKKKQLLMEGVDVTEMKEVGSVQLGESNINSDSDKVKKKKKRKKSTQQYVEESSIKDEAGEYENRAETFMKEGSPFSNGGSEKIFEKRKIALEDAENERTDSMVRENSEEKILESNNGKADQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLRLRQILSQYGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLAKVDKSRALNSIEERLKKKQKLRKDSEMNSALADSQKLPKLIRSFPQTQPVAHSAVQNKQRLSTNVLAGVFGSS 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34571861 34585011 - CaPI482276_09g019930.1 Cam09g1993 136322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1993 896 CDD RRM_ABT1_like 688 785 IPR034353 -
Cam09g1993 896 Gene3D - 626 771 IPR012677 -
Cam09g1993 896 PANTHER ACTIVATOR OF BASAL TRANSCRIPTION 1 592 895 IPR039119 GO:0000447(PANTHER)|GO:0000472(PANTHER)|GO:0000480(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0034462(PANTHER)
Cam09g1993 896 MobiDBLite consensus disorder prediction 642 673 - -
Cam09g1993 896 Coils Coil 831 851 - -
Cam09g1993 896 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 688 770 IPR000504 GO:0003723(InterPro)
Cam09g1993 896 SMART rrm1_1 689 773 IPR000504 GO:0003723(InterPro)
Cam09g1993 896 MobiDBLite consensus disorder prediction 517 554 - -
Cam09g1993 896 MobiDBLite consensus disorder prediction 570 603 - -
Cam09g1993 896 Pfam Cytochrome P450 3 367 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam09g1993 896 Pfam RNA recognition motif 691 770 IPR000504 GO:0003723(InterPro)
Cam09g1993 896 SUPERFAMILY RNA-binding domain, RBD 684 770 IPR035979 GO:0003676(InterPro)
Cam09g1993 896 Gene3D Cytochrome P450 1 385 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam09g1993 896 MobiDBLite consensus disorder prediction 458 479 - -
Cam09g1993 896 MobiDBLite consensus disorder prediction 521 535 - -
Cam09g1993 896 PRINTS E-class P450 group I signature 29 48 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam09g1993 896 PRINTS E-class P450 group I signature 340 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam09g1993 896 PRINTS E-class P450 group I signature 233 250 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cam09g1993 896 SUPERFAMILY Cytochrome P450 2 368 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0940 Cam-Chr7:23101027 Cam09g1993 Cam-Chr9:34571861 5.80E-83 dispersed
Cam09g1993 Cam-Chr9:34571861 Cam03g0317 Cam-Chr3:4385937 4.10E-09 dispersed
Cam09g1993 Cam-Chr9:34571861 Cam09g0053 Cam-Chr9:1453267 9.30E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1993 K12639 - csv:101219009 610.912