Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1998 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGATCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTGTCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.96 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34622976 34626444 + CaPI482276_09g019980.1 Cam09g1998 136327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1998 414 Pfam Pectate lyase 146 331 IPR002022 -
Cam09g1998 414 FunFam Pectate lyase 65 407 - -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Cam09g1998 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cam09g1998 414 Gene3D - 65 407 IPR012334 -
Cam09g1998 414 SMART amb_all 140 337 IPR002022 -
Cam09g1998 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
Cam09g1998 414 PANTHER PECTATE LYASE 18-RELATED 20 411 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0451 Cam-Chr3:5529484 Cam09g1998 Cam-Chr9:34622976 1.30E-121 dispersed
Cam06g0790 Cam-Chr6:10686862 Cam09g1998 Cam-Chr9:34622976 1.50E-167 dispersed
Cam07g0165 Cam-Chr7:2858740 Cam09g1998 Cam-Chr9:34622976 9.10E-172 dispersed
Cam08g2221 Cam-Chr8:27475673 Cam09g1998 Cam-Chr9:34622976 2.20E-185 dispersed
Cam09g1998 Cam-Chr9:34622976 Cam10g1195 Cam-Chr10:25357712 1.50E-128 dispersed
Cam09g1998 Cam-Chr9:34622976 Cam05g0405 Cam-Chr5:3733631 4.00E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1998 K01728 - csv:101217834 773.852