Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2011 ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTACGGCGCCGGACCATGGCAGACTGCCCACGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCTAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCGGGCATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGGAGGGAGGGAGGGATGAGGTTTACGATCAATGGATTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGGTCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGGTGGGTCAATCACTTTCGTTTAGTGTCAAAGGCAGTGATGGTCGGATTTCAACTTCCTCCAATATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCACCGGCAAAAACTTCTGA 792 50.63 MAATISTIFLISLSNFFLIMSLGVESRALTGGLYGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFSVKGSDGRISTSSNIVPSHWQFGQTFTGKNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34743180 34744153 + CaPI482276_09g020110.1 Cam09g2011 136340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2011 263 Gene3D - 172 263 IPR036749 -
Cam09g2011 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Cam09g2011 263 FunFam Expansin 28 167 - -
Cam09g2011 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Cam09g2011 263 SMART dpbb_1 74 161 IPR007112 -
Cam09g2011 263 PANTHER EXPANSIN-A15 21 263 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 Gene3D - 31 167 IPR036908 -
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cam09g2011 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Cam09g2011 263 FunFam Expansin 171 263 - -
Cam09g2011 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cam09g2011 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Cam09g2011 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cam09g2011 263 CDD DPBB_EXPA_N 38 166 - -
Cam09g2011 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0142 Cam-Chr3:2342561 Cam09g2011 Cam-Chr9:34743180 7.40E-121 dispersed
Cam09g2011 Cam-Chr9:34743180 Cam11g0988 Cam-Chr11:17050594 1.10E-98 dispersed
Cam07g0755 Cam-Chr7:18214357 Cam09g2011 Cam-Chr9:34743180 2.70E-78 transposed
Cam02g2077 Cam-Chr2:33675434 Cam09g2011 Cam-Chr9:34743180 4.20E-124 wgd
Cam04g0911 Cam-Chr4:23247577 Cam09g2011 Cam-Chr9:34743180 1.20E-121 wgd
Cam07g0331 Cam-Chr7:4460313 Cam09g2011 Cam-Chr9:34743180 1.30E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2011 - - - 0.0