Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2020 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACCTTCTATAACGAGCTTCGTGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGCATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGCTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGTTATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATAGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 47.0 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34808112 34809633 - CaPI482276_09g020200.1 Cam09g2020 136349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2020 377 Gene3D - 140 340 - -
Cam09g2020 377 Pfam Actin 5 377 IPR004000 -
Cam09g2020 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cam09g2020 377 PRINTS Actin signature 51 62 IPR004000 -
Cam09g2020 377 PRINTS Actin signature 238 254 IPR004000 -
Cam09g2020 377 PRINTS Actin signature 63 85 IPR004000 -
Cam09g2020 377 PRINTS Actin signature 142 161 IPR004000 -
Cam09g2020 377 PRINTS Actin signature 28 37 IPR004000 -
Cam09g2020 377 PRINTS Actin signature 117 130 IPR004000 -
Cam09g2020 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cam09g2020 377 SMART actin_3 7 377 IPR004000 -
Cam09g2020 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cam09g2020 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cam09g2020 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cam09g2020 377 FunFam Actin, muscle 182 273 - -
Cam09g2020 377 Gene3D - 10 371 - -
Cam09g2020 377 FunFam Actin, alpha skeletal muscle 3 173 - -
Cam09g2020 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cam09g2020 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cam09g2020 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cam09g2020 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cam09g2020 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2810 Cam-Chr5:35220651 Cam09g2020 Cam-Chr9:34808112 4.60E-59 dispersed
Cam09g2020 Cam-Chr9:34808112 Cam10g1718 Cam-Chr10:31211794 1.80E-216 dispersed
Cam07g0320 Cam-Chr7:4300500 Cam09g2020 Cam-Chr9:34808112 2.10E-217 transposed
Cam02g2090 Cam-Chr2:33762781 Cam09g2020 Cam-Chr9:34808112 9.80E-215 wgd
Cam04g0905 Cam-Chr4:23173196 Cam09g2020 Cam-Chr9:34808112 4.40E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2020 K10355 - csv:101220611 745.732