Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam09g2036 | ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA | 1080 | 42.04 | MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 34913714 | 34915150 | - | CaPI482276_09g020360.1 | Cam09g2036 | 136365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam09g2036 | 359 | ProSiteProfiles | Zinc finger Dof-type profile. | 75 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cam09g2036 | 359 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 63 | 276 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam09g2036 | 359 | Pfam | Dof domain, zinc finger | 75 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cam09g2036 | 359 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Cam09g2036 | 359 | MobiDBLite | consensus disorder prediction | 134 | 155 | - | - | |
| Cam09g2036 | 359 | MobiDBLite | consensus disorder prediction | 116 | 155 | - | - | |
| Cam09g2036 | 359 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - | |
| Cam09g2036 | 359 | ProSitePatterns | Zinc finger Dof-type signature. | 77 | 113 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam09g2036 | Cam-Chr9:34913714 | Cam10g0808 | Cam-Chr10:16342245 | 5.10E-27 | dispersed | |
| Cam10g2068 | Cam-Chr10:34456661 | Cam09g2036 | Cam-Chr9:34913714 | 1.50E-41 | wgd | |
| Cam02g2096 | Cam-Chr2:33819555 | Cam09g2036 | Cam-Chr9:34913714 | 1.90E-39 | wgd | |
| Cam04g0898 | Cam-Chr4:23100913 | Cam09g2036 | Cam-Chr9:34913714 | 3.20E-34 | wgd | |
| Cam07g0322 | Cam-Chr7:4321424 | Cam09g2036 | Cam-Chr9:34913714 | 5.30E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 52645 | PF02701 | zf-Dof | 4.60E-31 | No_clan | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam09g2036 | - | - | - | 0.0 |