Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2036 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCATCAACAAGGAGCCGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA 1080 42.04 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQDHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34913714 34915150 - CaPI482276_09g020360.1 Cam09g2036 136365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2036 359 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam09g2036 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 276 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g2036 359 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam09g2036 359 MobiDBLite consensus disorder prediction 1 59 - -
Cam09g2036 359 MobiDBLite consensus disorder prediction 134 155 - -
Cam09g2036 359 MobiDBLite consensus disorder prediction 116 155 - -
Cam09g2036 359 MobiDBLite consensus disorder prediction 11 33 - -
Cam09g2036 359 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2036 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2036 Cam-Chr9:34913714 Cam10g0808 Cam-Chr10:16342245 5.10E-27 dispersed
Cam10g2068 Cam-Chr10:34456661 Cam09g2036 Cam-Chr9:34913714 1.50E-41 wgd
Cam02g2096 Cam-Chr2:33819555 Cam09g2036 Cam-Chr9:34913714 1.90E-39 wgd
Cam04g0898 Cam-Chr4:23100913 Cam09g2036 Cam-Chr9:34913714 3.20E-34 wgd
Cam07g0322 Cam-Chr7:4321424 Cam09g2036 Cam-Chr9:34913714 5.30E-44 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam03g0662 . 17 181 C2C2-Dof Transcription Factor Family AT1G29160 60.2 4.5e-45 177.9
Cam01g2430 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 4.4e-40 161.4
Cam01g0165 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.2e-42 169.1
Cam03g0662 . 17 181 C2C2-Dof Transcription Factor Family AT2G34140 55.6 3.1e-43 171.8
Cam10g2068 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cam09g2036 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Cam03g0159 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Cam01g0165 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.6e-44 176.4
Cam03g0159 . 61 142 C2C2-Dof Transcription Factor Family AT5G02460 86.6 1.1e-38 157.9
Cam09g2036 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Cam03g0159 . 50 148 C2C2-Dof Transcription Factor Family AT3G55370 73.7 3.8e-38 156.0
Cam10g2068 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Cam02g2096 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.6e-37 152.1
Cam04g0898 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Cam06g1679 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52645 PF02701 zf-Dof 4.60E-31 No_clan Cam TF