Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2056 ATGCCAATCCATAAATTTTCAATCGGATCACCTGGAGAGGCGAGCCAACCGGACGCGATTAAGGCCGCATTTGCCGAATTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTGGCTTTTGATAAGTTAACGGACGGTGGATCTGCGACGCCGTCGGGGCTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTATTTGTGGCTGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGTTTGCTCAATTGCTTGGTTCTGTTGTTGCGTGCTTCCTTCTCAAGTTTGCGACTGGTGGAAAGGTAACACCAGCATTTGCCTTATCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAGTAGATCCAAAGAGGGAGAATTTGGGCATAATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCAAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAATCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACTCTCTTTATCTCAGACTCCATGCATGATCCTCTTACTCAGTATAATGATTTCTAG 762 46.06 MPIHKFSIGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFDKLTDGGSATPSGLIVASLAHAFALFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWFAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAVDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVITWSWTHHWVYWLGPMAGAAIATIVYDTLFISDSMHDPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35147693 35150518 - CaPI482276_09g020560.1 Cam09g2056 136385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2056 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cam09g2056 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2056 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
Cam09g2056 253 SUPERFAMILY Aquaporin-like 16 241 IPR023271 -
Cam09g2056 253 FunFam Probable aquaporin TIP1-1 4 252 - -
Cam09g2056 253 PANTHER AQUAPORIN-8 6 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cam09g2056 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2056 Cam-Chr9:35147693 Cam10g1958 Cam-Chr10:33529225 8.40E-85 dispersed
Cam09g2056 Cam-Chr9:35147693 Cam04g0967 Cam-Chr4:23710415 4.70E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2056 K09873 - csv:101222909 475.707