Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2060 ATGGAGGTTACATACTCATCACCTAGCGCCACCAGTCTTGCTTTCTCTAATTCTGCTCTTTCCGCCATGCCTGCCTCCGGCCGGCCTGTCAAGGTCATTCCATTGCAGCATCCTAGTACGACGTCCGCCTCCTCGGCCGGTGGTTTCTACGCCGGCACTCTGGTAAAGTCATGGACGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGTTACCTTGCTCCCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATATCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAACTAGCCGGGCTTCAACCTATATACGGACTTTATTCCGGTTTTCTCCCTTTGTTCATCTATGCAATTTTTGGTTCTTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTACTGGTTTCCAATGTCCTGGGTGGAATTGTCAACTCATCTGAGGAATTATATACTGAACTCGCAATATTATTGGCACTCATGGTTGGAATATTGGAATGCGTGATGGGTCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGCCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCTTTGTGATTGGATTATCCCAAGTGAAATACTTTCTGGGGTATGATGTATCAAGAAGTAGCAGAATTGTGCCTCTAATTGAGAGCATAATAGCTGGAGCAGACGGGTTCATATGGGCACCTTTTATAATGGGATCAGTCATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCCGTTGTTTTGGGCACAACTTTGACGAAAGTATTAAATCTACCTTCCATTACTTTGGTTGGAGACATTCCCCAAGGCCTTCCAATGTTTTCTATTCCTAAAAGATTTGAGCACGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACTGGAGTGGCTATATTGGAATCTGTTGGGATTGCGAAAGCATTAGCAGCCAAGAATGGGTATGAGTTAGATTCAAATCAGGAGTTATTTGGCCTTGGAGTAGCCAATGTTGTCGGCTCATTTTTTTCTGCATATCCCACAACAGGTTCTTTCTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCGCTGTTTGAGCACATTCCTCAGTGTGCTTTGGCTGCCATTGTCATCTCTGCGGTTTTAACTTTGGTGGATTACGAGGAAGCTATTTTTTTGTGGCGTATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTACTACGTTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAATATTCAACAGTATCCTGAGGCATATACCTATAATGGGATCGTGATTGTTCGAATTGATGCACCAATTTATTTTGCAAACACAAGTTACATCAAAGACAGGTTACGTGATTATGAAGTTGAAGTGGATCGATTTACTGGTCGTGGACCGGACGTCGAAAGAGTCTATTTTGTGATTATAGAGATGGCACCTGTTACTTACATAGATTCAAGTGCTGTCCAAGCTCTAAAAGAATTGTATCAAGAGTACAAACTTCGCGATATTCAGATTGCCATTTCCAATCCGAATCGAGATGTTCTGCTTACATTTTCAAGATCTGGCGTCGTCGAGCTTATTGGCAAGGAGTGGTTTTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGTCTTCAACATGTGGAGAGCTTAAATGAAACAAACAAAATATCAGATCCATCACCTAAAGATGGATCATCAAGCTTTCTCCAAAGTTTACTGAAGTCTAGAAGTGAGGATTTATCAGTGAGCCAATTAGAGTCAGGCTTCCAAAAATCTCCAAGTTTCTTCGGAGTTTGTTTTACATCAACTCCTTCTTCTTCCCCTTCCTCAGCTGCCTACACGGTTTCTCCTCCTGCTGTTTTGTCACTGCTTTCCTCCGCCATTGTTATTGCACTCCGAAATTTAGCATCTCCAGAACCTGATCTCATTTGTGCAAGCATTTTGGATTCACACAGTCAAATCACATTAATTCACAATGAAGGTAGTGAAAAGTACAATGTCTATGGTCTTCGTATTGGAAGCTCAAGTTATATAATAGGAAATAAGTTGAATAGTATACTCTTAATAATGTCACCACCTCAATCCAAAATTAGATATGGATCACTCTGCACTTATCAGGAACTACATTCCTTAGCTGAGACTGAGAGTAATGATAACACATTTCTACCATGGTTGGAACGAAAAGCAGAGACGAAGATCTCGTCAGTGCTTTCTGTTGGGAAATCTTCCATTGGAAGGTCTCTGTTTGCTTCTGAGACTATACGGGCTGGAGATTGTATTTTAAAGGTTCCTTTCAATGTGCAAATTTCACCTCATAGTCTTCCTTTACCCATTAGAGATCTTTTAGGCAATGAGATTGGAAATGTTGCCAAGCTTGCTGTTGTGATTCTTCTTGAACAGAAATTGGGCCTGGGCTCTGAATGGGCGCCTTACATTACCCGGCTTCCTCAACCATGGGAGATGCATAACACAATATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTAAAAGCCCTTTGTATGAGGAATCACTTAATCAAAGATCACAGATTGGAAGGGAATTTCTGGCAATCAGGAACGCTCTGGAAACCTTCCCTGAAATTATTGATCGGATCAATTGCGATGATTTCATGCATGCATATTCCCTTGTTACTTCTAGAGCATGGAGAAGCCCGAAGAGTGTCTCTCTGATTCCATTTGCAGATTTTTTAAATCACAATGGCGTTTCAGAAGCAATGGTATTGAATGATGATGAAAAACAGCTCTCTGAGGTCATTGCTGATCGTGATTATGCCCCTGGTGAACATGTACTAATAAGGTATGGAAAATATTCAAATGCTACGCTGATGTTGGACTTTGGGTTTGCGCTTCCATACAACATTCATGATCAGGTACAGGTCCAGGTTAAAACAGTTAAAGATGATCCTTTGGCAGGCGTAAAGTTGGAACTTTGGCAAAGAAGTTGCACACCAGCTACTGAGTATGTTAATGGCGTTTACTCCCTTGGGAATTCTTTCACCATCAGGGAAGTGAGATGTGCCACTGGGAGAGGGAGAGGTCTTCCCCAATCACTTCGTGCATTTGCTCGTATTTTGTCTTGCACTAATCCTCAGGAATTAAATGAATTAAGTTCTGAAGCTGTTAATGGTGATGGTCGGTTGGCTCGAATTCCACTGAAGAATGTCAATAAAGAGGTTGAAGCACATCGGATTCTGCTTTCTCAATTCAAACAATTAGTTGAAGAGTATAATGCATCTATTGAGGCACTGGGGCCTGTTGATTCTCCCTGTTTGTGCAACAAGTTGGCACGGCGAAGGCTGATGGCCCAACATCTTCTCACCGGTGAGCTTCGCATCCTCAACTCCGCTATTGCTTGGCTGGAGAATTATTGTGATGCCATTTAG 3684 42.48 MEVTYSSPSATSLAFSNSALSAMPASGRPVKVIPLQHPSTTSASSAGGFYAGTLVKSWTKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDILSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFIYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAFVIGLSQVKYFLGYDVSRSSRIVPLIESIIAGADGFIWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVLGTTLTKVLNLPSITLVGDIPQGLPMFSIPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVLTLVDYEEAIFLWRIDKKDFLLWVITAITTLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLRDYEVEVDRFTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKELYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLNETNKISDPSPKDGSSSFLQSLLKSRSEDLSVSQLESGFQKSPSFFGVCFTSTPSSSPSSAAYTVSPPAVLSLLSSAIVIALRNLASPEPDLICASILDSHSQITLIHNEGSEKYNVYGLRIGSSSYIIGNKLNSILLIMSPPQSKIRYGSLCTYQELHSLAETESNDNTFLPWLERKAETKISSVLSVGKSSIGRSLFASETIRAGDCILKVPFNVQISPHSLPLPIRDLLGNEIGNVAKLAVVILLEQKLGLGSEWAPYITRLPQPWEMHNTIFWNESELEMIRKSPLYEESLNQRSQIGREFLAIRNALETFPEIIDRINCDDFMHAYSLVTSRAWRSPKSVSLIPFADFLNHNGVSEAMVLNDDEKQLSEVIADRDYAPGEHVLIRYGKYSNATLMLDFGFALPYNIHDQVQVQVKTVKDDPLAGVKLELWQRSCTPATEYVNGVYSLGNSFTIREVRCATGRGRGLPQSLRAFARILSCTNPQELNELSSEAVNGDGRLARIPLKNVNKEVEAHRILLSQFKQLVEEYNASIEALGPVDSPCLCNKLARRRLMAQHLLTGELRILNSAIAWLENYCDAI 1227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35175933 35197743 - CaPI482276_09g020600.1 Cam09g2060 136389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2060 1227 Pfam Sulfate permease family 89 462 IPR011547 GO:0016020(InterPro)
Cam09g2060 1227 Gene3D set domain protein methyltransferase, domain 1 786 1048 - -
Cam09g2060 1227 SUPERFAMILY SpoIIaa-like 514 636 IPR036513 -
Cam09g2060 1227 Pfam Rubisco LSMT substrate-binding 1066 1213 IPR015353 -
Cam09g2060 1227 NCBIfam sulfate permease 75 632 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2060 1227 Pfam STAS domain 513 632 IPR002645 -
Cam09g2060 1227 SUPERFAMILY SET domain 812 1053 IPR046341 -
Cam09g2060 1227 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 1046 1225 IPR036464 -
Cam09g2060 1227 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 807 1048 - -
Cam09g2060 1227 PANTHER SULFATE TRANSPORTER 57 638 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g2060 1227 Gene3D - 1051 1224 IPR036464 -
Cam09g2060 1227 FunFam Sulfate transporter 31 492 639 - -
Cam09g2060 1227 Gene3D STAS domain 492 639 IPR036513 -
Cam09g2060 1227 ProSiteProfiles STAS domain profile. 512 636 IPR002645 -
Cam09g2060 1227 CDD STAS_SulP_like_sulfate_transporter 513 629 - -
Cam09g2060 1227 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0666 Cam-Chr1:7351148 Cam09g2060 Cam-Chr9:35175933 4.40E-14 dispersed
Cam09g2060 Cam-Chr9:35175933 Cam11g0135 Cam-Chr11:2973139 6.90E-92 dispersed
Cam09g2060 Cam-Chr9:35175933 Cam11g1556 Cam-Chr11:28362295 4.50E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52646 PF00916 Sulfate_transp 2.00E-118 CL0062 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2060 K18059 - csv:101202870 1230.7