Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2080 ATGGCAAAAAATATGCAGTCGCCGCCGCCGCCACCGTCGTCGATGGTAGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGAGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATGAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGAGAGTAGATGCTGCGAACAGTTTGATATACGAAGCGAACGCTAGGATTCGAGACCCAATCTATGGTTGCACTGGTTCAATTTTTCAACTTCAAAATCAAGTGAGTGAGCTCCATGCACAATTAGCTGTGGCAAAGGCTGAGGTTCATAAAATGGAACTTCAACAGGCAAATTTGTTAGCCCTAATTCGCAAGGGAAGAAGTCAATTTGAAGGTGAAGATCAAGTTTGCAAAAGAAATGTGAGCATGTTGAGGACTCATTTCCCACTGAAAAGTGTTCTTGTTCATATTGGACGTCATGGGTCCATGCTTCAGGTTGTTTCTCTGTCATCCTTAACATCTGATAATCTCATTACCACCGTACTTAACTGTAGAAGCCCCAATAAAGCACTTGAACTCTTCAATGCGGCACCAGAAAAGAATACTCAGCTTTACTCAGCCATCATTCATGTCTTGGTTGGATCCAAGCTATTTTCCCATGCCAGATGTTTGCTGAAAGATCTCGTAGAAAACCTCCTCGTAAAATCTCACAAGCCTTACCATGTAAGTCAATTGGCATTCAGTGCGTTGAGTCGCTTAAAATCCTCAAAATTTACTCCCAATGTATATGGTGAGTTACTTATTGTCTTATCTAAGATGGGGCTTGTAGAAGAAGCTTTGTGGATGTACCGCAAAGTTGGGGCGGCACTCGCAAAGCAGGCTTGTAATGTGCTTTTAGATGTCTTGGTTAAGACTTCGAGGTTTGAATTGTTGTGGAGGATTTATGAGGAAATGATTTCCAATGGGCTGTCTCCTGACGTTATCACTTATGGCATCCTAATCGATGGTTGCTGCCGTCAGGGAGATCTTTTAAGGGCACATGAGATGTTTGATGAAATGAGAGTGAAAGGAATTGAGCCAACTGTTGTCGTGTACACAATTCTTATTCGTGGCCTTTGCTCAGAGAACAAAATGGAGGAAGCGGAGAGTATGCATAGAGCGATGAGGGAAGTCGGGGTACTTCCAAACGTGTATACTTACAACACTTTGATGGATGGGTACTGCAAGTTGGCCAATGCAAAAAAAGCTCTTAGATTGTATCAAGATATGGTGGGTGAAGGTTTAGTGCCAGACGATGTTACATTTGGCATTTTAATTGATGGACTCTGCAAATATGGTGACATCAAGACTGCTCGTAATCTTTCTGTGAATATGGTAAAATTTAGTGTTACTCCCAGTATAGCTGTATATAACTCTTTGATTGATGGTTACTGTAAGGCAGGAGATGTTTCTGAAGCAATGGCTTTCTTTTTGGAGCTGGAAAGATTTAAAGTTTCGCCTGATGTCATTACATACAGTATACTTATTAGAGGTCTCTGTTCTGCTGGTCAAATTGAGGAAGCGGATAACATAATTGAGAAAATGATGAAAGAGGGAATTCCTGCAAACTCTGTTACATATAATTCATTAATTGATGGGTGCTGCAAAGAAGGCAACATGAAAAAGGCGCTGGAAATATGCTCCCGAATGACTGAAAATGGTGTCGAACCAAATGTGATCACTTTCTCAATCCTGATTGATGGGTATTGCAAGATAAGGAACTTGCGAGCTGCTATGGGCATATATTCAGAGATGGTTATCAAAGGCCTTTCTCCGGATGTGGTTGCTTATACAGCTATGATAGATGGGCATTGCAAATATGGTAGCATGAAAGAGGCTCTTAAACTCTATAGTGATATGCTGGATAATGGCCTTACCCCAAATTGTTACACTATCAGTTGCTTATTAGATGGGCTTTGTAAAGATGGCAGAATTTCAAATGCACTCGAACTTTTCTTGGAAAAGACTGGATTTCGGACTACCAGGTGTGATGTCGATGCGGGAGGAAGCAAGCCTTCATTCATAAATCATGTCGTGTATACTGCTCTAATCCATGGATTGTGTGAGGATGGGCAAATTTTTAAGGCAGCAAAGTTGTTTTCAGACATGAGATGTTACGGTTTGCAACCAGATGAAGTGATTTATGTAGTCATGTTACAAGGGTGCTTCCAAGTTTTTGATTTGGAAATTGGGGAATTGGTTGGGGATGAGGGGAGCTGGTTTTCTACAGGTTTGAGTTACCGCCAATCACAGTCGGTCTCCACACTCTGCTTTCGAATTTGGGCGTTTCTTGAAGAAGTTGCAGCATCTTCCTTAATCCGCCATCATGGGGATATTAAACTGGAAATTGTAAATCAGGAGAATGGTATTTCGAGGACTTTGAAGACTCGGGGAATGGGAGCTGGTCGTAAGTTGAAGTCGCACCGTAGAAGGCAGAGGTGGGCAGATAAGTCATATAAGAAATCTCATCTTGGTAATGAGTGGAAAAAGCCATTTGCAGGGTCATCTCATGCAAAAGGGATTGTGCTTGAAAAGATTGGAATTGAAGCCAAGCAGCCAAATTCTGCTATTAGAAAATGTGCTCGTGTTCAACTGATTAAAAATGGGAAGAAAATTGCTGCTTTTGTACCTAATGATGGCTGCCTCAATTATATTGAGGAAAATGACGAGGTATTGATCGCGGGGTTCGGACGTAAGGGTCATGCTGTAGGAGATATTCCTGGTGTTAGGTTCAAGGTTGTTAAGGTTTCTGGTGTTTCTCTTCTGGCTCTCTTCAAAGAGAAGAAAGAAAAGCCAAGATCCTAG 2859 42.39 MAKNMQSPPPPPSSMVVLSPCAACKILRRRCVDKCVLEPYFPPTEPLKFAAVHEIFGAGNVIKFLQRVDAANSLIYEANARIRDPIYGCTGSIFQLQNQVSELHAQLAVAKAEVHKMELQQANLLALIRKGRSQFEGEDQVCKRNVSMLRTHFPLKSVLVHIGRHGSMLQVVSLSSLTSDNLITTVLNCRSPNKALELFNAAPEKNTQLYSAIIHVLVGSKLFSHARCLLKDLVENLLVKSHKPYHVSQLAFSALSRLKSSKFTPNVYGELLIVLSKMGLVEEALWMYRKVGAALAKQACNVLLDVLVKTSRFELLWRIYEEMISNGLSPDVITYGILIDGCCRQGDLLRAHEMFDEMRVKGIEPTVVVYTILIRGLCSENKMEEAESMHRAMREVGVLPNVYTYNTLMDGYCKLANAKKALRLYQDMVGEGLVPDDVTFGILIDGLCKYGDIKTARNLSVNMVKFSVTPSIAVYNSLIDGYCKAGDVSEAMAFFLELERFKVSPDVITYSILIRGLCSAGQIEEADNIIEKMMKEGIPANSVTYNSLIDGCCKEGNMKKALEICSRMTENGVEPNVITFSILIDGYCKIRNLRAAMGIYSEMVIKGLSPDVVAYTAMIDGHCKYGSMKEALKLYSDMLDNGLTPNCYTISCLLDGLCKDGRISNALELFLEKTGFRTTRCDVDAGGSKPSFINHVVYTALIHGLCEDGQIFKAAKLFSDMRCYGLQPDEVIYVVMLQGCFQVFDLEIGELVGDEGSWFSTGLSYRQSQSVSTLCFRIWAFLEEVAASSLIRHHGDIKLEIVNQENGISRTLKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35352295 35363511 - CaPI482276_09g020800.1 Cam09g2080 136409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Cam09g2080 952 ProSiteProfiles LOB domain profile. 19 114 IPR004883 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 165 294 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 NCBIfam pentatricopeptide repeat 696 730 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 508 541 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 403 436 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 613 647 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 299 332 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 543 577 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 333 367 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 368 402 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 578 612 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 474 507 IPR002885 -
Cam09g2080 952 NCBIfam pentatricopeptide repeat 438 471 IPR002885 -
Cam09g2080 952 SUPERFAMILY HCP-like 412 644 - -
Cam09g2080 952 Pfam PPR repeat 300 328 IPR002885 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Cam09g2080 952 Pfam Ribosomal protein S12/S23 841 951 IPR006032 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam09g2080 952 FunFam 40S ribosomal protein S23 835 952 - -
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 297 462 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 NCBIfam 30S ribosomal protein S12 816 951 IPR005680 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015935(InterPro)
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cam09g2080 952 Coils Coil 93 120 - -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Cam09g2080 952 SUPERFAMILY Nucleic acid-binding proteins 830 950 IPR012340 -
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Cam09g2080 952 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 438 742 - -
Cam09g2080 952 Gene3D - 835 952 IPR012340 -
Cam09g2080 952 ProSitePatterns Ribosomal protein S12 signature. 869 876 IPR006032 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam09g2080 952 Pfam Lateral organ boundaries (LOB) domain 20 111 IPR004883 -
Cam09g2080 952 CDD Ribosomal_S23 836 949 IPR005680 GO:0003735(InterPro)|GO:0006412(InterPro)|GO:0015935(InterPro)
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 463 531 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 606 676 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 688 755 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 Gene3D Tetratricopeptide repeat domain 532 605 IPR011990 GO:0005515(InterPro)
Cam09g2080 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 610 659 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 400 449 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 694 741 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 337 378 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 541 589 IPR002885 -
Cam09g2080 952 Pfam PPR repeat family 470 518 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0241 Cam-Chr3:3530318 Cam09g2080 Cam-Chr9:35352295 1.30E-39 dispersed
Cam03g0244 Cam-Chr3:3559117 Cam09g2080 Cam-Chr9:35352295 5.20E-37 dispersed
Cam09g2080 Cam-Chr9:35352295 Cam10g2021 Cam-Chr10:34058553 2.50E-73 dispersed
Cam03g0638 Cam-Chr3:7226234 Cam09g2080 Cam-Chr9:35352295 4.80E-09 transposed
Cam02g2155 Cam-Chr2:34349783 Cam09g2080 Cam-Chr9:35352295 2.60E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52647 PF00164 Ribosom_S12_S23 3.60E-48 CL0021 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2080 - - - 0.0