Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2081 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGCGGAGGTAGTTCGGCTCACTACCATCCCTCGATACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCGAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCGGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGGCGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGGGAGCAGATAG 1458 50.96 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPANSRRHSGPPKIDASPIKNVAERDFTGGSR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35375784 35378967 - CaPI482276_09g020810.1 Cam09g2081 136410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2081 485 MobiDBLite consensus disorder prediction 324 351 - -
Cam09g2081 485 MobiDBLite consensus disorder prediction 395 411 - -
Cam09g2081 485 Coils Coil 177 197 - -
Cam09g2081 485 PANTHER IQ-DOMAIN 5-RELATED 6 438 - -
Cam09g2081 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cam09g2081 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cam09g2081 485 MobiDBLite consensus disorder prediction 377 394 - -
Cam09g2081 485 MobiDBLite consensus disorder prediction 1 35 - -
Cam09g2081 485 Gene3D iswi atpase 111 149 - -
Cam09g2081 485 MobiDBLite consensus disorder prediction 320 485 - -
Cam09g2081 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0039 Cam-Chr1:770328 Cam09g2081 Cam-Chr9:35375784 1.50E-26 dispersed
Cam03g1240 Cam-Chr3:24925706 Cam09g2081 Cam-Chr9:35375784 3.00E-33 dispersed
Cam04g0841 Cam-Chr4:22637438 Cam09g2081 Cam-Chr9:35375784 1.30E-106 dispersed
Cam05g0021 Cam-Chr5:711456 Cam09g2081 Cam-Chr9:35375784 1.00E-29 dispersed
Cam05g1064 Cam-Chr5:9742873 Cam09g2081 Cam-Chr9:35375784 1.70E-20 dispersed
Cam05g1966 Cam-Chr5:28517486 Cam09g2081 Cam-Chr9:35375784 2.30E-29 dispersed
Cam05g2284 Cam-Chr5:30951492 Cam09g2081 Cam-Chr9:35375784 1.20E-116 dispersed
Cam06g0111 Cam-Chr6:3076655 Cam09g2081 Cam-Chr9:35375784 4.40E-26 dispersed
Cam06g0278 Cam-Chr6:4720957 Cam09g2081 Cam-Chr9:35375784 3.40E-29 dispersed
Cam06g0643 Cam-Chr6:8653731 Cam09g2081 Cam-Chr9:35375784 6.80E-16 dispersed
Cam07g1020 Cam-Chr7:24513221 Cam09g2081 Cam-Chr9:35375784 1.50E-25 dispersed
Cam07g1539 Cam-Chr7:30038013 Cam09g2081 Cam-Chr9:35375784 4.30E-22 dispersed
Cam09g0023 Cam-Chr9:1193365 Cam09g2081 Cam-Chr9:35375784 6.80E-10 dispersed
Cam09g0070 Cam-Chr9:1566597 Cam09g2081 Cam-Chr9:35375784 1.20E-21 dispersed
Cam01g0768 Cam-Chr1:8565639 Cam09g2081 Cam-Chr9:35375784 7.70E-28 transposed
Cam01g2409 Cam-Chr1:36014360 Cam09g2081 Cam-Chr9:35375784 1.20E-33 transposed
Cam02g0258 Cam-Chr2:3431822 Cam09g2081 Cam-Chr9:35375784 1.30E-13 transposed
Cam10g1543 Cam-Chr10:29106640 Cam09g2081 Cam-Chr9:35375784 2.80E-20 transposed
Cam10g2014 Cam-Chr10:33989639 Cam09g2081 Cam-Chr9:35375784 1.70E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g2081 . 1 479 IQD Protein Family AT3G52290 54.2 2.3e-103 372.9
Cam03g1240 . 50 457 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Cam05g1966 . 1 438 IQD Protein Family AT2G26180 61.8 9.1e-121 430.6
Cam01g2409 . 50 323 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Cam07g1020 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cam01g2409 . 50 271 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Cam07g1020 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cam01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Cam06g0278 . 1 509 IQD Protein Family AT4G00820 50.9 2.4e-113 406.4
Cam09g0023 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40