Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2084 ATGCCAGAGTGGTTAAGTGAGCTGGGAACAAGCCTGGTTGATCCAAAAAGGGCTGAGATTGACGGGAGTTGGAGACGCTATAAGAGTTCAAATAGTGTGATTCCGAGTAAAAGGGGAAAGAAATCAATCGGGAACTCCACGAGTGGATCAGTTGATGGAGGAGCTACTGACTATCCAGATTTGGATTCATCAATGGATGCAACAGAGGAAGAAGTGAAGATTACACTTTGGATTCATGAAGACTTACTTTTAGTAGCGTTCTTGATTCTTCCTTGCTGCGAGTGTTTAAGCGCAGTTCCTTCTCCTTCCTCAGATTCAAGTATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTTGATTCTGGAAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACACGTGAACATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACGACTCCCAAATACTCTAGGTCTAGGTACGATGAAATCGTCAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGGTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGCCCTACCCTTCTGGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATAGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACCTTTGCCCCATCTGGACTTACTACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTTCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTCGCCGTGAAAGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACGAAGATTGACAGACGATCTGGAAAAGAACTGGAGAAAGAGCCCAAGTTCTTGAAAAATGGGGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCTATGGTGGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGCGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGGTAAGTGA 1671 45.96 MPEWLSELGTSLVDPKRAEIDGSWRRYKSSNSVIPSKRGKKSIGNSTSGSVDGGATDYPDLDSSMDATEEEVKITLWIHEDLLLVAFLILPCCECLSAVPSPSSDSSMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35405251 35409291 + CaPI482276_09g020840.1 Cam09g2084 136413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2084 556 FunFam Elongation factor 1-alpha 336 423 - -
Cam09g2084 556 SUPERFAMILY Translation proteins 333 428 IPR009000 -
Cam09g2084 556 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 433 536 IPR009001 -
Cam09g2084 556 MobiDBLite consensus disorder prediction 27 53 - -
Cam09g2084 556 CDD EF1_alpha_II 337 427 - -
Cam09g2084 556 Pfam Elongation factor Tu domain 2 355 420 IPR004161 GO:0005525(InterPro)
Cam09g2084 556 CDD EF1_alpha_III 430 533 - -
Cam09g2084 556 Pfam GTP-eEF1A C-terminal domain-like 434 534 IPR054696 -
Cam09g2084 556 Gene3D Translation factors 336 423 - -
Cam09g2084 556 Gene3D - 102 335 IPR027417 -
Cam09g2084 556 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 168 183 IPR031157 -
Cam09g2084 556 FunFam Elongation factor 1-alpha 430 537 - -
Cam09g2084 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 356 IPR027417 -
Cam09g2084 556 CDD EF1_alpha 116 334 - -
Cam09g2084 556 Pfam Elongation factor Tu GTP binding domain 113 330 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 FunFam Elongation factor 1-alpha 108 333 - -
Cam09g2084 556 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 112 337 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 PANTHER TRANSLATION FACTOR 111 534 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cam09g2084 556 Gene3D Translation factors 430 537 - -
Cam09g2084 556 NCBIfam translation elongation factor EF-1 subunit alpha 108 540 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cam09g2084 556 PRINTS GTP-binding elongation factor signature 116 129 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 PRINTS GTP-binding elongation factor signature 195 205 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 PRINTS GTP-binding elongation factor signature 211 222 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 PRINTS GTP-binding elongation factor signature 175 183 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 PRINTS GTP-binding elongation factor signature 255 264 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g2084 556 Hamap Elongation factor Tu [tuf]. 109 539 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cam09g2084 556 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2084 Cam-Chr9:35405251 Cam09g2086 Cam-Chr9:35419586 1.90E-259 dispersed
Cam09g2084 Cam-Chr9:35405251 Cam09g2085 Cam-Chr9:35413209 1.90E-259 tandem
Cam02g2168 Cam-Chr2:34447096 Cam09g2084 Cam-Chr9:35405251 5.20E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2084 K03231 - csv:105434427 895.575