Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g2084 | ATGCCAGAGTGGTTAAGTGAGCTGGGAACAAGCCTGGTTGATCCAAAAAGGGCTGAGATTGACGGGAGTTGGAGACGCTATAAGAGTTCAAATAGTGTGATTCCGAGTAAAAGGGGAAAGAAATCAATCGGGAACTCCACGAGTGGATCAGTTGATGGAGGAGCTACTGACTATCCAGATTTGGATTCATCAATGGATGCAACAGAGGAAGAAGTGAAGATTACACTTTGGATTCATGAAGACTTACTTTTAGTAGCGTTCTTGATTCTTCCTTGCTGCGAGTGTTTAAGCGCAGTTCCTTCTCCTTCCTCAGATTCAAGTATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTTGATTCTGGAAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCAACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACACGTGAACATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGATGGATGCCACGACTCCCAAATACTCTAGGTCTAGGTACGATGAAATCGTCAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGGTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGCCCTACCCTTCTGGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATAGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACCTTTGCCCCATCTGGACTTACTACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTTCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTCGCCGTGAAAGATCTCAAGCGTGGTTATGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACGAAGATTGACAGACGATCTGGAAAAGAACTGGAGAAAGAGCCCAAGTTCTTGAAAAATGGGGATGCTGGATTTGTTAAGATGATTCCCACCAAGCCTATGGTGGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGCGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGGTAAGTGA | 1671 | 45.96 | MPEWLSELGTSLVDPKRAEIDGSWRRYKSSNSVIPSKRGKKSIGNSTSGSVDGGATDYPDLDSSMDATEEEVKITLWIHEDLLLVAFLILPCCECLSAVPSPSSDSSMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSRSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSGK | 556 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35405251 | 35409291 | + | CaPI482276_09g020840.1 | Cam09g2084 | 136413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g2084 | 556 | FunFam | Elongation factor 1-alpha | 336 | 423 | - | - | |
Cam09g2084 | 556 | SUPERFAMILY | Translation proteins | 333 | 428 | IPR009000 | - | |
Cam09g2084 | 556 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 433 | 536 | IPR009001 | - | |
Cam09g2084 | 556 | MobiDBLite | consensus disorder prediction | 27 | 53 | - | - | |
Cam09g2084 | 556 | CDD | EF1_alpha_II | 337 | 427 | - | - | |
Cam09g2084 | 556 | Pfam | Elongation factor Tu domain 2 | 355 | 420 | IPR004161 | GO:0005525(InterPro) | |
Cam09g2084 | 556 | CDD | EF1_alpha_III | 430 | 533 | - | - | |
Cam09g2084 | 556 | Pfam | GTP-eEF1A C-terminal domain-like | 434 | 534 | IPR054696 | - | |
Cam09g2084 | 556 | Gene3D | Translation factors | 336 | 423 | - | - | |
Cam09g2084 | 556 | Gene3D | - | 102 | 335 | IPR027417 | - | |
Cam09g2084 | 556 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 168 | 183 | IPR031157 | - | |
Cam09g2084 | 556 | FunFam | Elongation factor 1-alpha | 430 | 537 | - | - | |
Cam09g2084 | 556 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 110 | 356 | IPR027417 | - | |
Cam09g2084 | 556 | CDD | EF1_alpha | 116 | 334 | - | - | |
Cam09g2084 | 556 | Pfam | Elongation factor Tu GTP binding domain | 113 | 330 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | FunFam | Elongation factor 1-alpha | 108 | 333 | - | - | |
Cam09g2084 | 556 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 112 | 337 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | PANTHER | TRANSLATION FACTOR | 111 | 534 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
Cam09g2084 | 556 | Gene3D | Translation factors | 430 | 537 | - | - | |
Cam09g2084 | 556 | NCBIfam | translation elongation factor EF-1 subunit alpha | 108 | 540 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Cam09g2084 | 556 | PRINTS | GTP-binding elongation factor signature | 116 | 129 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | PRINTS | GTP-binding elongation factor signature | 195 | 205 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | PRINTS | GTP-binding elongation factor signature | 211 | 222 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | PRINTS | GTP-binding elongation factor signature | 175 | 183 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | PRINTS | GTP-binding elongation factor signature | 255 | 264 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g2084 | 556 | Hamap | Elongation factor Tu [tuf]. | 109 | 539 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Cam09g2084 | 556 | MobiDBLite | consensus disorder prediction | 27 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g2084 | Cam-Chr9:35405251 | Cam09g2086 | Cam-Chr9:35419586 | 1.90E-259 | dispersed | |
Cam09g2084 | Cam-Chr9:35405251 | Cam09g2085 | Cam-Chr9:35413209 | 1.90E-259 | tandem | |
Cam02g2168 | Cam-Chr2:34447096 | Cam09g2084 | Cam-Chr9:35405251 | 5.20E-255 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g2084 | K03231 | - | csv:105434427 | 895.575 |