Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam09g2099 | ATGTCTTCATCGCTCTGTTCCTCAATTCGGCCATTGCCACCGCACTACTGGCGGCGGAAGAACTTCAGATTCTTCCTATTGCTTCAATCAAACAGATGCATTTGCTTCGCACCTCGCTTCGTTGCTTGCTCGAACAACGACGACTCTGTTGCAATACCCAGACCTACGCCGCTGGCTTTCGATCCTGCGGAGGATCTGTACGGACTTGGCATCGATTTAAAACCTAGGTATGTAGCTTCTAGGGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGTTACCATGTCCAAGTTGCCGAGGTAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGATTGTTCCGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGTCTGGGGGATCGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCGTTAAGAATGAAGGAAGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCCCCTCCTCCTGAAGTTGGTTTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCTAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAACCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGCAAAAACTGCGGCCGTGAAGGACATCGAAGACACTATTGTCCAGAACTTAAGGAAGCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACCGGAGGACTTGTGAGAAGTCTAGGTCGAATAGTATACCGATGACCGCAACAATACAGCGCCATTGCGGGATATGCGGTGTGAAGGGCCACAACAGGAGGAACTGTCAGAAGTCCAAGTTGAGCAATCCAACTAACCTACGAATAAATTATGCACATCGTCGGAGCAGTCGCAATGTGTTGAGGCTGAATTTGATCAGTGAAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCAGCAGAACTGTCCCAATATTGATAGGGAAGGTTCAAATCCTAGTAGCCCATCCTTATTTATCTATTGTATTGGTGATATATATAACTACATTGCTGCTGCTGCTGTACTGTAA | 1299 | 45.03 | MSSSLCSSIRPLPPHYWRRKNFRFFLLLQSNRCICFAPRFVACSNNDDSVAIPRPTPLAFDPAEDLYGLGIDLKPRYVASRAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEAIDRRFRCRVCGEKGHNRRTCEKSRSNSIPMTATIQRHCGICGVKGHNRRNCQKSKLSNPTNLRINYAHRRSSRNVLRLNLISENSRVRQYHCRICNKNGHSQQNCPNIDREGSNPSSPSLFIYCIGDIYNYIAAAAVL | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35541781 | 35550725 | + | CaPI482276_09g020990.1 | Cam09g2099 | 136428 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam09g2099 | 432 | ProSiteProfiles | Zinc finger CCHC-type profile. | 386 | 401 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | SMART | c2hcfinal6 | 331 | 347 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | SMART | c2hcfinal6 | 274 | 290 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | SMART | c2hcfinal6 | 300 | 316 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | SMART | c2hcfinal6 | 385 | 401 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | PANTHER | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 93 | 399 | IPR051714 | GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER) | |
| Cam09g2099 | 432 | SUPERFAMILY | Retrovirus zinc finger-like domains | 378 | 406 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | ProSiteProfiles | Zinc finger CCHC-type profile. | 275 | 290 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | Coils | Coil | 164 | 184 | - | - | |
| Cam09g2099 | 432 | SUPERFAMILY | Retrovirus zinc finger-like domains | 272 | 318 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cam09g2099 | 432 | Gene3D | - | 325 | 412 | - | - | |
| Cam09g2099 | 432 | Gene3D | - | 272 | 323 | - | - | |
| Cam09g2099 | 432 | ProSiteProfiles | Zinc finger CCHC-type profile. | 300 | 316 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam09g2099 | - | - | - | 0.0 |