Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2102 ATGTCGATCTCTTCTCCCTCCGACGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCCCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGCTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1011 46.79 MSISSPSDDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35595801 35597877 - CaPI482276_09g021020.1 Cam09g2102 136431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2102 336 Gene3D - 60 177 - -
Cam09g2102 336 CDD CYCLIN_AtCycD-like_rpt1 76 174 - -
Cam09g2102 336 SUPERFAMILY Cyclin-like 161 278 IPR036915 -
Cam09g2102 336 SMART cyclin_7 82 170 IPR013763 -
Cam09g2102 336 Pfam Cyclin, C-terminal domain 179 280 IPR004367 -
Cam09g2102 336 Pfam Cyclin, N-terminal domain 46 177 IPR006671 -
Cam09g2102 336 PANTHER CYCLINS 36 273 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam09g2102 336 ProSitePatterns Cyclins signature. 77 108 IPR048258 -
Cam09g2102 336 SUPERFAMILY Cyclin-like 40 176 IPR036915 -
Cam09g2102 336 SMART Cyclin_C_2 179 312 IPR004367 -
Cam09g2102 336 FunFam D2/4-type cyclin 60 177 - -
Cam09g2102 336 Gene3D - 50 240 - -
Cam09g2102 336 CDD CYCLIN_AtCycD-like_rpt2 179 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2700 Cam-Chr5:34393106 Cam09g2102 Cam-Chr9:35595801 3.10E-125 dispersed
Cam08g2089 Cam-Chr8:26428121 Cam09g2102 Cam-Chr9:35595801 1.00E-32 dispersed
Cam09g2102 Cam-Chr9:35595801 Cam10g0993 Cam-Chr10:22102980 2.80E-51 dispersed
Cam09g2102 Cam-Chr9:35595801 Cam08g1609 Cam-Chr8:22257233 8.30E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2102 K18810 - csv:101210686 616.305