Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2140 ATGGCGCTACAGTCTTCGACCCTCGGTTCGCCCGCCTTCTCTATTGGCGCAAAACCGTTTTCTCTTCTGCATTGCTGTCGATATAAGGCTGTACCGGTAAGGATTTTTCGGAGTAACAATCGGTACCCTAATCTTTATTCGTCGAATTGTGTTCAATTTCGTAGTTCTGGAAGCATACTGTGTACGATTTATGAAGAAACTAATGTGTTTGCAAATGGAGCACGTTTGGGATGTGGGGTTGGTGAGAGCTCGAACTGCCCGAATGTTCCTGAGCCGAATCGAGATTTTGTTAGAGAAATAGCAAAGCGTGGGATTCTCTTCACTGCAATTGTCTACGGTGTGCTGGTTGTTGGCTGTAAAAATGTTTTGGCAACAGAGGGTGTGGTTAGTTTCGGCAAGGATATTGTTGGGCAGGGGATATTGGCGTTTAGAAATGCATGGCCAAAGGCATTGCTGGTTCTTAAGATTTTCAAGGAACAAGGTTTGATTTTGGCTTTGCTTTTGGGACTCTCGGCGTTTTTCTCCATGGCTGAGACTTCAATAACCACACTTTGGCCTTGGAAGGTACGTGAATTGGCTGAAAAGGAACCTGAAGACGGCGTCTTCAAAATGCTTCGTACGGACGTTACAAGATTTCTCACAACCATACTGATTGGCACAACTGTTGTAAATATTGGGGCAACTGCATTAGTCACTGAAGCTGCAACTGCAATCTTTGGGGAAGCTGGTGTTAGCGCAGCAACTGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAACTCACTCCAAAAAGTATTGCTGTGCATAATGCTACAGAGGTTGCTAGGGTTGTGGTCAGGCCAGTGGCATGGCTTTCTGTGATACTTTACCCAGTTGGAAGAATTGTCACATACCTATCAATGGGGATGCTTAAAATGCTTGGTATGAAAGGGAGAAGTGAGCCATTTGTAACTGAGGAGGAACTAAAATTGATGTTGCGAGGGGCAGAGCTGAGTGGGGCCATAGAGGAGGAAGAGCAGGATATGATTGAGAATGTTCTTGAGATAAAAGATACACATGTGAGAGAGGTGATGACACCTCTTATTGATGTGGTTGCAATAGATGGCAGTGCCACACTGGTGGACTTCCACAATTTGTGGGTGACTCATCAGTACTCAAGGGTGCCTGTTTTTGAGCAGCGCATAGATAACATTGTTGGGATTGCATATGCAATGGATTTGCTGGATTTTGTACAGAAGGGTGAAGTACTTGAGAGCACTACGGCTGGGGATATGGCTCATAAACCTGCTTACTTTGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCCGAGAGTTTCGTATCCGGAAAGTTCACATGGCTGTTGTGCTTAACGAATATGGCGGCACTGTTGGAATAGTAACCTTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTTGACGAAAATGATTCAAAGGAGGAGATCCAGAAAAAAACTGGCTACATTGTGATGCGAGCAGATGGAGTATATGATGTGGATGCCAATACCGCAATCGATCAGCTCTCTGAAGATCTAAATATCAAAATGCCAGAGGGTCATCAATATGAGACGGTGTCGGGTTTTGTTTGTGAGGCTTTTGGATATATTCCAAGGACGGGTGAAAGCGTTAAAGTAATCTTAGAAAAGGAAGATGATGAAGAAGAAGAGTCCAATCCTGAAAACAAGAATCAAAAGGAAAGACACTTAATCTTTAATATTGAGATATTAGCAGGAAATGCTAGAAAGGTTAGTGCTGTTCGGTTTGAAAGGGCGAATGATGATAATGGTGAAGTGGCTCATCTTGTCCCAAAAGTAATGAAGAAGAAATGGAGCAGTAATGGGGAGTCTGGTAGTGTAGAAAATGATAATTTATTATCATCAAAGGGACTTGACGACAGCCTCTCTAGAGAGCATCAAAATGATGATCATAGTAGTGATAGAAATTAG 1971 43.28 MALQSSTLGSPAFSIGAKPFSLLHCCRYKAVPVRIFRSNNRYPNLYSSNCVQFRSSGSILCTIYEETNVFANGARLGCGVGESSNCPNVPEPNRDFVREIAKRGILFTAIVYGVLVVGCKNVLATEGVVSFGKDIVGQGILAFRNAWPKALLVLKIFKEQGLILALLLGLSAFFSMAETSITTLWPWKVRELAEKEPEDGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARVVVRPVAWLSVILYPVGRIVTYLSMGMLKMLGMKGRSEPFVTEEELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLIDVVAIDGSATLVDFHNLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDFVQKGEVLESTTAGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRADGVYDVDANTAIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESVKVILEKEDDEEEESNPENKNQKERHLIFNIEILAGNARKVSAVRFERANDDNGEVAHLVPKVMKKKWSSNGESGSVENDNLLSSKGLDDSLSREHQNDDHSSDRN 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35976406 35985534 + CaPI482276_09g021400.1 Cam09g2140 136469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2140 656 Pfam Cyclin M transmembrane N-terminal domain 162 339 IPR002550 -
Cam09g2140 656 SMART CorC_HlyC_2 498 600 IPR005170 -
Cam09g2140 656 MobiDBLite consensus disorder prediction 639 656 - -
Cam09g2140 656 ProSiteProfiles CBS domain profile. 358 419 IPR000644 -
Cam09g2140 656 ProSiteProfiles CBS domain profile. 425 483 IPR000644 -
Cam09g2140 656 Pfam CBS domain 354 411 IPR000644 -
Cam09g2140 656 Pfam CBS domain 423 477 IPR000644 -
Cam09g2140 656 ProSiteProfiles CNNM transmembrane domain profile. 153 339 IPR002550 -
Cam09g2140 656 MobiDBLite consensus disorder prediction 619 638 - -
Cam09g2140 656 MobiDBLite consensus disorder prediction 614 656 - -
Cam09g2140 656 SUPERFAMILY FAD-binding/transporter-associated domain-like 496 603 IPR036318 GO:0050660(InterPro)
Cam09g2140 656 SMART cbs_1 363 412 IPR000644 -
Cam09g2140 656 SMART cbs_1 429 477 IPR000644 -
Cam09g2140 656 SUPERFAMILY CBS-domain pair 341 480 IPR046342 -
Cam09g2140 656 Gene3D - 333 488 IPR046342 -
Cam09g2140 656 FunFam Magnesium/cobalt efflux protein CorC 335 485 - -
Cam09g2140 656 PANTHER HEMOLYSIN-RELATED 127 625 - -
Cam09g2140 656 Pfam Transporter associated domain 500 598 IPR005170 -
Cam09g2140 656 Gene3D - 495 594 IPR016169 -
Cam09g2140 656 CDD CBS_pair_CorC_HlyC_assoc 353 474 IPR044751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0002 Cam-Chr7:1207942 Cam09g2140 Cam-Chr9:35976406 3.00E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38