Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g2155 | ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTGTTGGAAAAAGGTTAATAGATATCCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATCGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCGGCCTAATACTGAGCAATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTCGAGAAGTTAGATTTTATCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGACGTCTGTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATCGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTCGATGATGACGGGGTCGTCGGGGCTGCAGAATTTGTCTTATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTGCACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCTTAA | 1068 | 41.39 | MGSQEARQPLLPTSSNTVGKRLIDIPRSKRRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVLYKLKEMGKITEDDIAPVLKEFENLDVDQSGTLSKSDITLAQLS | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36084890 | 36086132 | + | CaPI482276_09g021550.1 | Cam09g2155 | 136484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g2155 | 355 | SUPERFAMILY | Voltage-gated potassium channels | 182 | 292 | - | - | |
Cam09g2155 | 355 | PRINTS | Two pore domain K+ channel signature | 116 | 144 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Cam09g2155 | 355 | PRINTS | Two pore domain K+ channel signature | 232 | 241 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Cam09g2155 | 355 | FunFam | Calcium-activated outward-rectifying potassium channel 1 | 71 | 166 | - | - | |
Cam09g2155 | 355 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 77 | 284 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
Cam09g2155 | 355 | Pfam | Ion channel | 80 | 160 | IPR013099 | - | |
Cam09g2155 | 355 | Pfam | Ion channel | 200 | 272 | IPR013099 | - | |
Cam09g2155 | 355 | SUPERFAMILY | Voltage-gated potassium channels | 71 | 178 | - | - | |
Cam09g2155 | 355 | Gene3D | - | 178 | 282 | - | - | |
Cam09g2155 | 355 | SUPERFAMILY | EF-hand | 293 | 350 | IPR011992 | - | |
Cam09g2155 | 355 | Gene3D | - | 71 | 165 | - | - | |
Cam09g2155 | 355 | ProSitePatterns | EF-hand calcium-binding domain. | 298 | 310 | IPR018247 | - | |
Cam09g2155 | 355 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - | |
Cam09g2155 | 355 | ProSitePatterns | EF-hand calcium-binding domain. | 337 | 349 | IPR018247 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1125 | Cam-Chr1:17122362 | Cam09g2155 | Cam-Chr9:36084890 | 8.40E-90 | dispersed | |
Cam01g2491 | Cam-Chr1:36597390 | Cam09g2155 | Cam-Chr9:36084890 | 2.10E-50 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g2155 | K05389 | - | csv:101216032 | 606.675 |