Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2171 ATGGCGTCTCTCGTTTCACTCCTCAATCTCCCTCTCTTCTCTCTGCTCTTAATCGCTCTCGCCGCCGCGCCGCCCTTCGTTGCTTCGCATCACTTCCACGTCGGCGAAAACAGAGGCTGGTCAAACCCTACCGGAAACCACACGCATAGCTTCAACTTCTGGGCCTCACAAAATCGCTTCCATGTCGGCGACACTCTCTATTTCGAGTACAGAAACGATTCGGTTCTGGTTGTGAACTACACGAATTACAGAGACTGTATCGTCTCGGACCCAATCGCGAAGTTTGAGAATGGAAGTGGCGGTACGATTTTCCGATTGGATCGAGATGGAGATTTCTATTTCATCAGTGGAAATATAGAGCATTGTGTGAACGGACAGAAATTAGCAGTGCGAGTGATGAATGATGATGATGATGACGATGAATCTGCAGATTCACCGGAAGGAATGGAGTCGTGGAATTGGGGACCGCCGTCCCTGAATTCGACGGTGAAGGCGACGTTGGCGTCGTATTTCGCGACGGCGATTGGAGTTAAGTCAACTTTGGAGAAGTTGATTTTCTCTGTCAGGCCTTTGGTACATTCTGAGACATCAGTCAGACGGTTTCACCCTGTGGCTCCACTCACTGGCACTGCAAAGGCCGCTTCAATGGCGGCTTCGGAGCTCGAAGTTGCAGTCTTTATCGATACTGATTTCGGCACCCGCCTGGCAGTTGCCGTTCCGCCGGACATCTCTGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTGAAGCAAAACTCGAACTTCTACCATTTGCCTGACACGTTGCTCACGAAACTCGCTTCCCGGCTAGAAGTGATGCAGTTTCTTCATGTCAAAGCACGACCTTTGAATGAGTTTATCGAGCCTCGTTTACCCGAAAATGCTGATTGTTTCCCCAACCTAAACTATGTCACCTACCCTACGGAAAGCCGAGGCTTCTTGGGAATTGCCTGGAAGAGTAAAATCAGAATCAATGGTAAGAAACATACAAGAAAAAGGTTCAGAAGGATGAATTGCTCATCAAGACTAGTTGGCCGAGGCATCTTAGCCTGGAATACAAGGAGAAAGAGGAAAATAACTAACAAAAAACAGCTTTTAGAGCACATGGCAAAGAACTCTGATATGGGGTGTCCGATAAAAGATGCGGAAAATCCGAATGGCTCGATTGATACATCATTGTATCATTGTGTGGCAAATGAAGTGAGAATTACAAAACAACAAAAGTTGGCAAGCTCCTCATTGTTAGAGGCGGCCACAGCCAGTGAGTTATCATCTGAAGTCATGTCTGTTTCAAGTATCATAAAAAGATATTTTTCGAGCTATGACGAAGTGAGCAGTGTTTCAAACCAATCAAGCTACAACATTACTCAAAGTCAGCCAGAAGAATATTTGAAGATGAAGAAGAATATGGCAAGAGGCCCAAGCTTGTTACCATTGAAATTACCATTTAAAGCATGTTCTCAAAAGCCTGAGAGATCTAAGCTTGGGAAAAGGTTGGTGATGGCTTCATATAATCTTGGGATTTCTCCCATCAGGGGAAGACCAGAAATTTCACTGTGCAATGCTAAAGGTAAAAAGTTTCAAGAACTGACATCTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAGATTGA 1713 45.07 MASLVSLLNLPLFSLLLIALAAAPPFVASHHFHVGENRGWSNPTGNHTHSFNFWASQNRFHVGDTLYFEYRNDSVLVVNYTNYRDCIVSDPIAKFENGSGGTIFRLDRDGDFYFISGNIEHCVNGQKLAVRVMNDDDDDDESADSPEGMESWNWGPPSLNSTVKATLASYFATAIGVKSTLEKLIFSVRPLVHSETSVRRFHPVAPLTGTAKAASMAASELEVAVFIDTDFGTRLAVAVPPDISAGALKREVERVHFNCFPSIGEIKVDGFMVKQNSNFYHLPDTLLTKLASRLEVMQFLHVKARPLNEFIEPRLPENADCFPNLNYVTYPTESRGFLGIAWKSKIRINGKKHTRKRFRRMNCSSRLVGRGILAWNTRRKRKITNKKQLLEHMAKNSDMGCPIKDAENPNGSIDTSLYHCVANEVRITKQQKLASSSLLEAATASELSSEVMSVSSIIKRYFSSYDEVSSVSNQSSYNITQSQPEEYLKMKKNMARGPSLLPLKLPFKACSQKPERSKLGKRLVMASYNLGISPIRGRPEISLCNAKGKKFQELTSLAKSSCFEISDSED 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36217792 36225875 + CaPI482276_09g021710.1 Cam09g2171 136500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2171 570 CDD OsENODL1_like 32 133 IPR041846 -
Cam09g2171 570 Gene3D - 29 138 IPR008972 -
Cam09g2171 570 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055(InterPro)
Cam09g2171 570 ProSiteProfiles Phytocyanin domain profile. 30 134 IPR003245 GO:0009055(InterPro)
Cam09g2171 570 PANTHER BLUE COPPER PROTEIN 21 157 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cam09g2171 570 FunFam Early nodulin-like protein 1 29 137 - -
Cam09g2171 570 SUPERFAMILY Cupredoxins 29 133 IPR008972 -
Cam09g2171 570 MobiDBLite consensus disorder prediction 135 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2171 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2171 Cam-Chr9:36217792 Cam10g0519 Cam-Chr10:7691155 2.40E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g679 . . Bda07g00414 . . . . . . . Cma01g01071 . Car01g00947 . . . Cpe02g00827 Bhi09g01781 . . . . . . . . . . . . . Cone6ag0006 . . . Lsi02g01820 . . . . . . . Bpe11g00591 . . Bma14g00678 . Cmo01g01114 . . . . . . . . . . . . . . Cla09g02083 Cam09g2171 Cec09g2236 . . . . . . Chy01g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012285 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29