Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2175 ATGGCTGCCACCAAGTTCAACAAGAAGAAGGGTGTGAAACGGGACGACCCTCCATCGGAAAGGAAGAAGAAGGACGAGCTCTTCACACCTAAACGTTCTAAGGAGGAAGATGATGATTCTGAACTTTCTGATGCTCTGGATGAGGAAGAAGTAGATAATGGACTGATTGATGGTAACGAAGAAGGATCTGAGTCTGGTTCTGAAGATTCTTCTGATGGTGATGACCCTTTGGCTCATGATTTCCTCCAAGGAAGTGACGAAGAGAATGATTCAGGCTCGGCTTCAAGTTCTGATTCTGATGAAACTGACATCGAAGACAAGTCGAGAATCATCGATGAAAAAAGGGCGAGGGAAGAAAAAGATGCAGCGGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTGCCAACCAAGGAGGAACTTGAAGAGGAGACGCTTAGACCTCCTGATCTTTCAAATTTACAAAGGCGGATAAGAGAGATCGTTCGAGTTCTTTCGAATTTCAAGGCTTTGAGGCAAGAGGGAGCAACCCGTAAGGACTATGTTGAACAACTTAAGAAAGATATTGGATCATACTATGGTTATAATGAATTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCGATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATCTGGCAGATGTACTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTGATGGCTCTTGCTCCTCAGGAAAAAGAACGAATCGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGGATGATATTTGCAAATGAGATTAAAGCACCAAGATTGAAGTCGCTTACCGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCAAAAGTATTGGGCAGGAATACAGCTGATAGAGTTCTTTTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCTTAGAAGAAATCCAGAAATGTGCTGAGTTGCAGAAGCAACTTATACTCGCTGCAATTGACATGGTTGATTCAAATTCAAAATCTGGGGGGTATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTATGCACTTAAAAAGAGGGATGTGAAACTTGTGCCATGTGGCCTTGATTTTGGACGTCCCGGGTTCATCCGGTTCAGGGAAAAACGATTCCACCCATCTTTAGAAAAGACTAGACGTTTCTACCCCCATGTCCACAACATGGACGGGTTTTTTGTGGCGAAGTTGAAGAAAATGAGCAACAAGATTCCAACTGCACGATCTTCTGAATCATTGAAAGAGGCCGTGGAAGAAGATGATGGTGCAGAGAAGAGCGTAAATGAGAAGAATGATGGTGAATGTCTTCACCCGCAATTAAATGACAGTAAAAAGAGGAAGAAGGTTTCACAAAATCACGACGTCAAAAATAACAAAGAATCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTTCAAAAGCTAGGGAGGAAAAACGACAAGCTTTGAGGGAAAAGAAAGATGGGAGCAAGAAAGGGTAA 1827 42.36 MAATKFNKKKGVKRDDPPSERKKKDELFTPKRSKEEDDDSELSDALDEEEVDNGLIDGNEEGSESGSEDSSDGDDPLAHDFLQGSDEENDSGSASSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKEESDEFRLPTKEELEEETLRPPDLSNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGMIFANEIKAPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGRNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAIVDYALKKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTARSSESLKEAVEEDDGAEKSVNEKNDGECLHPQLNDSKKRKKVSQNHDVKNNKESKPTVEKRKKRKFPSREEISKAREEKRQALREKKDGSKKG 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36259274 36264544 - CaPI482276_09g021750.1 Cam09g2175 136504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2175 608 Gene3D Vaccinia Virus protein VP39 295 601 IPR029063 -
Cam09g2175 608 MobiDBLite consensus disorder prediction 520 572 - -
Cam09g2175 608 Gene3D Sun protein; domain 3 185 292 - -
Cam09g2175 608 NCBIfam NOL1/NOP2/sun family putative RNA methylase 231 507 IPR011023 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0008757(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase signature 279 293 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase signature 376 388 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase signature 308 318 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cam09g2175 608 MobiDBLite consensus disorder prediction 512 608 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 1 125 - -
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 182 202 IPR023273 GO:0008168(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 238 251 IPR023273 GO:0008168(InterPro)
Cam09g2175 608 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 215 227 IPR023273 GO:0008168(InterPro)
Cam09g2175 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 193 507 IPR029063 -
Cam09g2175 608 FunFam Ribosomal RNA methyltransferase Nop2 186 292 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 100 125 - -
Cam09g2175 608 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 83 511 IPR023267 GO:0000470(PANTHER)|GO:0001510(PANTHER)|GO:0001510(InterPro)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0009383(PANTHER)|GO:0070475(PANTHER)
Cam09g2175 608 Coils Coil 587 607 - -
Cam09g2175 608 Pfam 16S rRNA methyltransferase RsmB/F 296 506 IPR049560 -
Cam09g2175 608 MobiDBLite consensus disorder prediction 578 608 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 40 71 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 131 150 - -
Cam09g2175 608 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 219 508 IPR001678 GO:0008168(InterPro)
Cam09g2175 608 Coils Coil 116 136 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 8 39 - -
Cam09g2175 608 MobiDBLite consensus disorder prediction 72 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2175 K14835 - - csv:101211286 1056.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2175 Cam-Chr9:36259274 Cam11g1676 Cam-Chr11:29426671 6.80E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42