Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2180 ATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCGTTTAATTCTGATGCTACTACGTCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACGGGGGATGATATCGGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCATGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAGCTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTATGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATCCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCTTGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAAGACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCGTTTGTTCTGGACTGTGACGGTTGATAAGCTCGGCGGTAAGACTCGGAATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCCAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2301 44.37 MIHSGFFLAGPSFNSDATTSFISIPVSGEDGATGDDIGNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLYGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSKTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPRLFWTVTVDKLGGKTRNKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36313536 36319753 + CaPI482276_09g021800.1 Cam09g2180 136509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2180 766 ProSiteProfiles Zinc finger RING-type profile. 720 761 IPR001841 -
Cam09g2180 766 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 474 765 - -
Cam09g2180 766 ProSiteProfiles Zinc finger RING-type profile. 301 340 IPR001841 -
Cam09g2180 766 SMART ring_2 720 760 IPR001841 -
Cam09g2180 766 SMART ring_2 301 341 IPR001841 -
Cam09g2180 766 SMART ringv_2 719 761 IPR011016 GO:0008270(InterPro)
Cam09g2180 766 CDD RING-H2_RNF6-like 719 761 - -
Cam09g2180 766 Pfam Ring finger domain 300 340 IPR001841 -
Cam09g2180 766 Pfam Ring finger domain 719 761 IPR001841 -
Cam09g2180 766 SUPERFAMILY RING/U-box 296 340 - -
Cam09g2180 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 344 IPR013083 -
Cam09g2180 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 766 IPR013083 -
Cam09g2180 766 SUPERFAMILY RING/U-box 715 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1746 Cam-Chr8:23707391 Cam09g2180 Cam-Chr9:36313536 5.80E-46 dispersed
Cam09g2180 Cam-Chr9:36313536 Cam10g1627 Cam-Chr10:30085983 5.00E-32 dispersed
Cam09g2180 Cam-Chr9:36313536 Cam07g1528 Cam-Chr7:29911863 1.90E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2180 - - - 0.0