Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2191 ATGTTTACCAACGGCCGGCAACTCTTTCCCCGACCTCCGGCAGACTCCCGCGAGAAGTGGCTCAAGTATTACAGTTCATACCATGAAATACTGTTAGTCGGCGAGGGAGACTTCTCCTTCTCCCTCAGTTTGGCTATGTCTTTTGGCTCTGCTTCCAACATCGTCGCTACTTCTCTCGACTCCTATCTCGATGTAGTGACGAAGTACAAGAATGCGAGGTTAAATTTGAGGATTCTGAAGGGGTTAGGTGCGTCTGTATTACATGGAGTCGATGCAACTAAAATGAAGCGTCATATCGATTTACATATGCGGAAATTCGATAGAATCATCTTCAATTTTCCGCACGCTGGTTTCTTTCGGAGAGAGGACAATCTCTTAATGATTCGGATGCATAAGAGTCTTGTTCATGAGTTCTTCAAGAATGCAAGCCAAATGCTTCGAGTTGATGGCGAAATCCATGTGAATCACAAAACAAAACCCCCATTTTCGGATTGGAATGTTGTTCAACTCGCCCAAAAAAATTCATTGGAATTGATTGGATGTGCTGATTTCAATATACTGGACTACCCTGGATATAACAATAAGAGAGGGCAGGGCAAGAGATGTGATCGCCCTTTCTTTTTGGGTCAGTGCTCTACTTACAAATTTAGTATCAACCATTCAGCTAAAACGACACCAAGATGTTTATTGCATATGAACAATAATGCCTTAGATGTGCAAAGAAACCTCCCATTTCCAGAGATCCCAATCTCAAATCACTGCTATCATCATCCATATCCAACCCCATTTGAATCAGGTTATTCTCATAGGAACATCTCTATGCAGAATCATCCAACCCGGTTTGAACTTGATTATTCTTGTGCAACTCATTCTGTCAATGCACATAGTAGATGCATGACAGGAATGCTCGAGAGGATGTCGAATGACGACGTCAATTGGTCAAGCAATTTGCGGTCTAATTATGGTGAGAAGATACAGAGATCAGAGGCAAGAAGAACCATGCCAAGATTATTCCACCATTGGTAA 1026 42.3 MFTNGRQLFPRPPADSREKWLKYYSSYHEILLVGEGDFSFSLSLAMSFGSASNIVATSLDSYLDVVTKYKNARLNLRILKGLGASVLHGVDATKMKRHIDLHMRKFDRIIFNFPHAGFFRREDNLLMIRMHKSLVHEFFKNASQMLRVDGEIHVNHKTKPPFSDWNVVQLAQKNSLELIGCADFNILDYPGYNNKRGQGKRCDRPFFLGQCSTYKFSINHSAKTTPRCLLHMNNNALDVQRNLPFPEIPISNHCYHHPYPTPFESGYSHRNISMQNHPTRFELDYSCATHSVNAHSRCMTGMLERMSNDDVNWSSNLRSNYGEKIQRSEARRTMPRLFHHW 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36428971 36430501 - CaPI482276_09g021910.1 Cam09g2191 136520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2191 341 PANTHER PHENYLALANYL-TRNA SYNTHETASE 23 197 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Cam09g2191 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 181 IPR029063 -
Cam09g2191 341 FunFam Os09g0479300 protein 28 179 - -
Cam09g2191 341 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 31 196 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2191 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2167 Cam-Chr1:34392946 Cam09g2191 Cam-Chr9:36428971 4.80E-55 dispersed
Cam09g2191 Cam-Chr9:36428971 Cam09g2192 Cam-Chr9:36432077 2.20E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g02105 Cam09g2191 Cec09g2262 . . . . . . Chy01g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013837 0 3 0 0 0 1 0 1 1 0 1 1 0 1 1 0 1 0 0 1 1 1 0 1 1 1 1 1 1 3 23