Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2208 ATGGCTCTGCAGAGGATTCCTCACAGCACTCTAATGGAGATCTTGTTGAAGCTGGACCTCCAAACCCTCTGCTCCGTCGCTTGTGTCAGTAAAACCCTACAATTCGCCGTCGTTGAAGCCATTTCTCTCCTCTCCACTCTCCATCTTCCTATCACTTTCTCTCCAGATTCTCAAACTCTCAAGTTTGGCATTCTTGGTCGGTGCCGAGGCATGAGAAGCCTTACTGTTAATTGCCTCCGTCTTGATGATTCTTCTCTCGTGGATTTTCTTGGCCCTCATTTACTCGAGCTGAATTTGCTTTGCTGCTCTTTACTCTCTTATAAATTCCTTGCTGCTGTAGGCGAACTTTGTCCCAATTTGAGGGTGCTTGTGCTTGGATTGGTAGCTCGAGACTCTCCTGAAGTATTCAATAGAAACTTGGCTGAACTGCTCACAAGATGCTTGTTCTTAGATTTAATATCCCTGAAGATTCGAGGACCAGGAGATGTTGAGGCTAATTACTTTAGTGCTGTTGAAGCATTTCTTCCCAAAACAGTCAAAACACTGAAGTTGAAGTCACTGCTTCATCAAGAAGCAATTTGCATCATAAACAAACTAAGAGATTATGGGAACTCTTTAATCCCCACCTATTCAAGAAACTTTGAATGTCCTCAGTTATCTTCAGGGTTAATGTTGCAGTGCTTGTCACTTACCTTGGATGTTATTTCTAACGAGTTGATTATTACCATTGTCGACTCACTTCCTTTTTTGGCAGAGCTTCACTTGGAAGACATGCCGAACCAAAAACAATTGGTGCACCGTGACTTGACCAACAGGGGACTTCAGTCATTGAGCACTTGCCATAATCTGATATCACTTTCTCTTATTCGTGGTAGGCATAACCACCAAGTCTCTTTCAAAAAGCTGAATGATATGGGCATGTTTCTCTTGTCTGAGGGTTGCAAAGGTCTTGAGTCAGTGAGATTCTGTGGATTCTCTAAAGTCAGTGATGCTGGATTTGCGTCGATCTTTCACTCGTGCAATAGGCTGAAGAAATTTGAGATTCGTAATTCATCACATTTCTCAGACCTTGCACTCGACGGTTTTGAGGCCATCGGATGTTCTGTAACAGAGTTGAGATTATTATCATGCAGTCTTATAACTTGTGAATCTGTGAAGCAGTTGGCCTACTCTACAAGCTTGGAAGTCCTTGATCTATGTGGCTGCAAGAGCATATCAGATTCTTGCCTTGAATCCATTTCCACTTTGTGCAATTTATCATCACTGAATCTAACATCAACTGATATAACCAACTACGGTTTATCTATTCTTGGTCAGGGGAGTCTACCGATTGTACAATTGTCTCTTCGACATTGTAAGAGAGTAACCGAAGAAGGAATGTATCAATTGTTTTATGGTGGTGGGACAATAAGCACGACATTATCTGCCTTGGATCTTGGACACATTTCAGGAATAACCGATCGAGCAATCCAAATAATTGCTTCTGCTGGTGTTGGGATTACTGAGTTATGCATCAGATCTTGCTTCCATGTGACTGATTCTTCAGTGGAAGCTTTGGCGATGAAGAAACAATTCCAGGGTGAAGGGTTAAGCGGGTTGTCCCGTGAGATTAATCGAGTGTGGTTGACTCCACCTAGTTGTCATCGAGTTCGCCAACCATCGTTGACTCCTGCATTTGCCAACCACATCTTCTTTTGCACAAACATTCTTCTCCCCACTGTAAGCACAGCTAAGAACCCAAATTCAAGCAAGGAGCCAGTGATTTTTGAAGGACCCACTAATGTATTTCCATGGAACAATGGAATGCTGTGGAGGGGTCCAGTTACACACAAAGATGTGGAAACCATTAATAGTAGGTCTGTAGCTAATCATCTTCCAAATTACAAAAACAATGAAAGAGAATTGCATCCTTCTCTCAATAACTATTTCGCACAAAGGCACCGAGGAGAAAACGAGTTGGCTACTTTTTTGCCTGAGCAAGATGATACTTCCAGAATAAGTAAATTGAATGATATCGAAACGAGTAATCTGGATATCCAAATCATATTCATCAGATTTTTTTTGTAG 2067 41.9 MALQRIPHSTLMEILLKLDLQTLCSVACVSKTLQFAVVEAISLLSTLHLPITFSPDSQTLKFGILGRCRGMRSLTVNCLRLDDSSLVDFLGPHLLELNLLCCSLLSYKFLAAVGELCPNLRVLVLGLVARDSPEVFNRNLAELLTRCLFLDLISLKIRGPGDVEANYFSAVEAFLPKTVKTLKLKSLLHQEAICIINKLRDYGNSLIPTYSRNFECPQLSSGLMLQCLSLTLDVISNELIITIVDSLPFLAELHLEDMPNQKQLVHRDLTNRGLQSLSTCHNLISLSLIRGRHNHQVSFKKLNDMGMFLLSEGCKGLESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNSSHFSDLALDGFEAIGCSVTELRLLSCSLITCESVKQLAYSTSLEVLDLCGCKSISDSCLESISTLCNLSSLNLTSTDITNYGLSILGQGSLPIVQLSLRHCKRVTEEGMYQLFYGGGTISTTLSALDLGHISGITDRAIQIIASAGVGITELCIRSCFHVTDSSVEALAMKKQFQGEGLSGLSREINRVWLTPPSCHRVRQPSLTPAFANHIFFCTNILLPTVSTAKNPNSSKEPVIFEGPTNVFPWNNGMLWRGPVTHKDVETINSRSVANHLPNYKNNERELHPSLNNYFAQRHRGENELATFLPEQDDTSRISKLNDIETSNLDIQIIFIRFFL 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36627549 36635878 - CaPI482276_09g022080.1 Cam09g2208 136537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2208 688 SMART LRR_CC_2 471 496 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 497 522 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 392 416 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 91 116 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 366 391 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 417 440 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 441 466 IPR006553 -
Cam09g2208 688 SMART LRR_CC_2 314 339 IPR006553 -
Cam09g2208 688 SUPERFAMILY RNI-like 58 289 - -
Cam09g2208 688 SUPERFAMILY RNI-like 267 520 - -
Cam09g2208 688 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515(InterPro)
Cam09g2208 688 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Cam09g2208 688 Gene3D Ribonuclease Inhibitor 173 442 IPR032675 -
Cam09g2208 688 PANTHER UNCHARACTERIZED 39 460 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cam09g2208 688 SUPERFAMILY F-box domain 4 37 IPR036047 GO:0005515(InterPro)
Cam09g2208 688 Gene3D Ribonuclease Inhibitor 443 562 IPR032675 -
Cam09g2208 688 Pfam F-box domain 3 37 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0404 Cam-Chr2:4755747 Cam09g2208 Cam-Chr9:36627549 1.20E-58 dispersed
Cam09g2208 Cam-Chr9:36627549 Cam08g1689 Cam-Chr8:23160943 2.00E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24