Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2252 ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTTTTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGTTGTTCCTCCCTGGCTGAATGCTCAGGTCCCAGTGCCCCTCTTCTGGGCCATGCGGGGCTCACATTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGTGGATGTGTCCACGAGAATTGTATAAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATTGTTCGACTTCTTGTTCATAAATCTTTATGTTTATGTCTGGAAAATGATTGCAACTTATGAAAAGGCTGCTTTTAAATCAAAGCTATCTGCCCTGACCTTACAGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGGCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGAGCTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCAGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCCGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCGTTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCTGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATAGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA 3849 44.27 MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGICCSSLAECSGPSAPLLGHAGLTFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCIRARGFHYKAVQHFRFVKRKRLFDFLFINLYVYVWKMIATYEKAAFKSKLSALTLQNLALGTWHLAQAQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGVSISSAHNLLSAAAEKDEDIIF 1282
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 37089102 37105404 + CaPI482276_09g022520.1 Cam09g2252 136581
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2252 1282 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 493 968 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cam09g2252 1282 ProSitePatterns Amidases signature. 633 664 IPR020556 -
Cam09g2252 1282 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 Pfam Amidase 507 957 IPR023631 -
Cam09g2252 1282 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA 495 967 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cam09g2252 1282 Gene3D Amidase signature (AS) domain 486 970 IPR036928 -
Cam09g2252 1282 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Cam09g2252 1282 NCBIfam V-type ATP synthase subunit D 1030 1232 IPR002699 GO:0046961(InterPro)
Cam09g2252 1282 SUPERFAMILY WD40 repeat-like 11 267 IPR036322 GO:0005515(InterPro)
Cam09g2252 1282 PANTHER TRANSAMIDASE 474 966 IPR000120 GO:0003824(InterPro)
Cam09g2252 1282 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 Gene3D - 1021 1219 - -
Cam09g2252 1282 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 84 - -
Cam09g2252 1282 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 172 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 FunFam Actin-related protein 2/3 complex subunit 4 350 - -
Cam09g2252 1282 Pfam ATP synthase subunit D 1038 1229 IPR002699 GO:0046961(InterPro)
Cam09g2252 1282 SUPERFAMILY Amidase signature (AS) enzymes 489 974 IPR036928 -
Cam09g2252 1282 FunFam V-type proton ATPase subunit D 1022 1219 - -
Cam09g2252 1282 Gene3D - 4 349 IPR015943 GO:0005515(InterPro)
Cam09g2252 1282 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 SMART WD40_4 2 38 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Cam09g2252 1282 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2252 K02433 - csv:101212627 995.727