Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g2252 | ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAGTACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATTGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTTTTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGTTGTTCCTCCCTGGCTGAATGCTCAGGTCCCAGTGCCCCTCTTCTGGGCCATGCGGGGCTCACATTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGTGGATGTGTCCACGAGAATTGTATAAGAGCCAGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATTGTTCGACTTCTTGTTCATAAATCTTTATGTTTATGTCTGGAAAATGATTGCAACTTATGAAAAGGCTGCTTTTAAATCAAAGCTATCTGCCCTGACCTTACAGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGGCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGAGCTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCAGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCCGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCGTTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCTGATGACATTAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATAGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACGTGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGA | 3849 | 44.27 | MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGICCSSLAECSGPSAPLLGHAGLTFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCIRARGFHYKAVQHFRFVKRKRLFDFLFINLYVYVWKMIATYEKAAFKSKLSALTLQNLALGTWHLAQAQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPVLADDISLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGVSISSAHNLLSAAAEKDEDIIF | 1282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37089102 | 37105404 | + | CaPI482276_09g022520.1 | Cam09g2252 | 136581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g2252 | 1282 | Hamap | Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. | 493 | 968 | IPR004412 | GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro) | |
Cam09g2252 | 1282 | ProSitePatterns | Amidases signature. | 633 | 664 | IPR020556 | - | |
Cam09g2252 | 1282 | Pfam | WD domain, G-beta repeat | 45 | 82 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | Pfam | WD domain, G-beta repeat | 141 | 171 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | Pfam | Amidase | 507 | 957 | IPR023631 | - | |
Cam09g2252 | 1282 | NCBIfam | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | 495 | 967 | IPR004412 | GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro) | |
Cam09g2252 | 1282 | Gene3D | Amidase signature (AS) domain | 486 | 970 | IPR036928 | - | |
Cam09g2252 | 1282 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 69 | 83 | IPR019775 | - | |
Cam09g2252 | 1282 | NCBIfam | V-type ATP synthase subunit D | 1030 | 1232 | IPR002699 | GO:0046961(InterPro) | |
Cam09g2252 | 1282 | SUPERFAMILY | WD40 repeat-like | 11 | 267 | IPR036322 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | PANTHER | TRANSAMIDASE | 474 | 966 | IPR000120 | GO:0003824(InterPro) | |
Cam09g2252 | 1282 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 50 | 91 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | Gene3D | - | 1021 | 1219 | - | - | |
Cam09g2252 | 1282 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 50 | 84 | - | - | |
Cam09g2252 | 1282 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 140 | 172 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | FunFam | Actin-related protein 2/3 complex subunit | 4 | 350 | - | - | |
Cam09g2252 | 1282 | Pfam | ATP synthase subunit D | 1038 | 1229 | IPR002699 | GO:0046961(InterPro) | |
Cam09g2252 | 1282 | SUPERFAMILY | Amidase signature (AS) enzymes | 489 | 974 | IPR036928 | - | |
Cam09g2252 | 1282 | FunFam | V-type proton ATPase subunit D | 1022 | 1219 | - | - | |
Cam09g2252 | 1282 | Gene3D | - | 4 | 349 | IPR015943 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | SMART | WD40_4 | 87 | 126 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | SMART | WD40_4 | 2 | 38 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | SMART | WD40_4 | 132 | 172 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | SMART | WD40_4 | 43 | 82 | IPR001680 | GO:0005515(InterPro) | |
Cam09g2252 | 1282 | SMART | WD40_4 | 193 | 232 | IPR001680 | GO:0005515(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g2252 | K02433 | - | csv:101212627 | 995.727 |