Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2283 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCAATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATCGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCAGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTCGGAAGTAAACCAGCGCTAGCATGGAGTAGAAAGCTTTTAAAAGGATTGAAATTGGCTTGGAGAATTTTTTCCAATGTGAAGAATGAGCAATTGGATGACTGA 1587 43.67 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPALAWSRKLLKGLKLAWRIFSNVKNEQLDD 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37299108 37302280 - CaPI482276_09g022830.1 Cam09g2283 136612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2283 528 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Cam09g2283 528 FunFam Putative receptor-like protein kinase 176 269 - -
Cam09g2283 528 CDD STKc_IRAK 200 466 - -
Cam09g2283 528 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Cam09g2283 528 Coils Coil 214 234 - -
Cam09g2283 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g2283 528 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Cam09g2283 528 PANTHER OS01G0323000 PROTEIN 7 487 IPR052232 -
Cam09g2283 528 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524(InterPro)
Cam09g2283 528 MobiDBLite consensus disorder prediction 469 498 - -
Cam09g2283 528 FunFam Putative receptor-like serine/threonine-protein kinase 270 480 - -
Cam09g2283 528 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g2283 528 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g2283 528 SMART serkin_6 194 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1528 Cam-Chr2:28264937 Cam09g2283 Cam-Chr9:37299108 3.60E-150 dispersed
Cam05g1092 Cam-Chr5:9975964 Cam09g2283 Cam-Chr9:37299108 3.70E-70 dispersed
Cam06g0416 Cam-Chr6:6284928 Cam09g2283 Cam-Chr9:37299108 1.90E-154 dispersed
Cam08g2079 Cam-Chr8:26348287 Cam09g2283 Cam-Chr9:37299108 1.30E-145 dispersed
Cam09g2283 Cam-Chr9:37299108 Cam11g0552 Cam-Chr11:6992725 1.90E-78 dispersed
Cam02g1906 Cam-Chr2:32123309 Cam09g2283 Cam-Chr9:37299108 1.10E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85466 PF00069 Pkinase 7.20E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2283 - - - 0.0