Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g2321 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCCCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1176 49.06 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37620261 37622296 + CaPI482276_09g023210.1 Cam09g2321 136650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g2321 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 199 IPR046955 GO:0003700(InterPro)
Cam09g2321 391 MobiDBLite consensus disorder prediction 377 391 - -
Cam09g2321 391 MobiDBLite consensus disorder prediction 343 361 - -
Cam09g2321 391 MobiDBLite consensus disorder prediction 323 342 - -
Cam09g2321 391 MobiDBLite consensus disorder prediction 323 391 - -
Cam09g2321 391 FunFam Myb family transcription factor 31 89 - -
Cam09g2321 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cam09g2321 391 Gene3D - 31 89 - -
Cam09g2321 391 MobiDBLite consensus disorder prediction 258 277 - -
Cam09g2321 391 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cam09g2321 391 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cam09g2321 391 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cam09g2321 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g2321 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g2321 Cam-Chr9:37620261 Cam11g0985 Cam-Chr11:16711235 3.10E-30 dispersed
Cam04g0220 Cam-Chr4:7730369 Cam09g2321 Cam-Chr9:37620261 4.30E-19 transposed
Cam05g0378 Cam-Chr5:3480599 Cam09g2321 Cam-Chr9:37620261 9.90E-43 transposed
Cam07g0128 Cam-Chr7:2465804 Cam09g2321 Cam-Chr9:37620261 1.20E-21 transposed
Cam07g0221 Cam-Chr7:3340210 Cam09g2321 Cam-Chr9:37620261 3.40E-33 transposed
Cam10g1414 Cam-Chr10:27795707 Cam09g2321 Cam-Chr9:37620261 7.10E-16 transposed
Cam10g1350 Cam-Chr10:27048381 Cam09g2321 Cam-Chr9:37620261 1.20E-34 transposed
Cam02g1942 Cam-Chr2:32518806 Cam09g2321 Cam-Chr9:37620261 1.00E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam05g1220 . 252 452 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Cam09g1148 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cam05g2142 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cam08g2020 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cam05g2500 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 2.4e-53 206.1
Cam08g0944 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Cam03g0128 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.4e-60 229.6
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Cam05g0378 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.3e-65 246.1
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam11g0985 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 8.9e-50 194.5
Cam09g2321 . 1 391 G2-like Transcription Factor Family AT1G79430 53.4 1.0e-83 307.4
Cam02g1942 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cam05g0378 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cam01g2159 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT3G10760 58.1 8.0e-83 304.3
Cam04g0579 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52663 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cam TF