Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam10g0006 ATGCTTTCGGCTACTTCTCCACCGGATCTTGTGAAGATAGAGTGTTTGACTGTACCCTCCTCCCAATTCTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAGGTTATCGCCATTTTCTCTCCATTCACTAAATTACTCGGTGATTTACGCCTTTCCACCGCCGTTTCCGACTGTCTCGATTTGCTTGACTCTTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAGACCACAGCACCGGAGATTTGAGTTCCGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGACCTTCTTTCCATGGTCAAATCAATCCCCAATCAGCCGGCGGCTGACTTTCCTTCCTGGGTGAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTCGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGGGATTTCACCAGTGTGATGGATGCTGTATTAGCAGCCCCTGACAATAGCATACAACGTTATGTTATATACATAAAGAGGGGTGTGTACTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTAATGATGATTGGAGATGGAATTGATGCCACCATCATATCGGGTAATCGGAGTTTTATTGACGGTTGGACAACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCTCGAGACATAACATTCGAGAATACTGCAGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCGGACTCGGATCTGTCGGTATTCTTTAGATGCCGTATTAGAGGATATCAAGACACTCTGTACACGCACACCATGCGCCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGTAGCATCCTCGCGAAGAAAGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGATCTTAAACCTTCGGTTAACACCACAGCTACATACCTTGGAAGACCATGGAAAGAATATTCTAGAACCATTATCATGCAGTCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCGATTTTGCATTGAAGACACTATTCTACGCTGAGTTTATGAATTATGGACCAGGGGCGGGATTGGCGAAGCGTGTCAATTGGCCTGGTTACCGCCGGCTGAACCAAACTAGTGAAGCTTCTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACCGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1464 47.4 MLSATSPPDLVKIECLTVPSSQFSNSILSTIDVVQQVIAIFSPFTKLLGDLRLSTAVSDCLDLLDSSADQLSWSLSATQNPKAKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYDLLSMVKSIPNQPAADFPSWVKSEDRNLLQLNDFAADATVAADGTGDFTSVMDAVLAAPDNSIQRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALKTLFYAEFMNYGPGAGLAKRVNWPGYRRLNQTSEASNFTVAQFIEGNLWLPSTGVKYTAGLGAN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1694674 1697043 + CaPI482276_10g000060.1 Cam10g0006 136669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam10g0006 487 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Cam10g0006 487 SUPERFAMILY Pectin lyase-like 171 483 IPR011050 -
Cam10g0006 487 PANTHER PECTINESTERASE 29 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam10g0006 487 Pfam Pectinesterase 173 470 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam10g0006 487 FunFam Pectinesterase 167 484 - -
Cam10g0006 487 Gene3D - 167 484 IPR012334 -
Cam10g0006 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 148 IPR035513 -
Cam10g0006 487 Pfam Plant invertase/pectin methylesterase inhibitor 45 140 IPR006501 GO:0004857(InterPro)
Cam10g0006 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 144 IPR035513 -
Cam10g0006 487 CDD PMEI-like_4 1 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1733 Cam-Chr3:32422828 Cam10g0006 Cam-Chr10:1694674 1.40E-132 dispersed
Cam07g1131 Cam-Chr7:25788586 Cam10g0006 Cam-Chr10:1694674 3.20E-108 dispersed
Cam09g0553 Cam-Chr9:5515843 Cam10g0006 Cam-Chr10:1694674 1.20E-104 dispersed
Cam09g0554 Cam-Chr9:5538356 Cam10g0006 Cam-Chr10:1694674 1.80E-127 dispersed
Cam10g0006 Cam-Chr10:1694674 Cam11g0016 Cam-Chr11:1730878 1.20E-100 dispersed
Cam10g0006 Cam-Chr10:1694674 Cam01g0042 Cam-Chr1:793315 2.80E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam10g0006 K01051 - csv:101207185 897.116